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Tags: Science and math
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25–48 of 85 · Most stars

Spatial Single Cell Analysis in Python

  • single-cell-rna-seq
  • single-cell-genomics
  • spatial-transcriptomics
  • spatial-analysis

Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI (Nature Medicine). PLIP is a large-scale pre-trained model that can be used to extract visual and language features from pathology images and text description. The model is a fine-tuned version of the original CLIP model.

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

  • hubmap
  • imaging
  • openmicroscopy
  • ome-tiff

The RAW Complex.js is a complex numbers library written in JavaScript

  • complex-numbers
  • vector
  • trigonometric-functions
  • javascript

Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome

  • cancer-genomics
  • cnv-detection
  • single-cell
  • phylogeny