Repository Index

A collection of tools for painting super-resolution images

• microscopy
• super-resolution
• smlm
• dna-paint

Tools for drawing 2d and 3d interactive visualizations using Jupyter proxy widgets

Pure Python library for reading NIS Elements ND2 images and metadata

• nd2
• pims
• nikon
• nis-elements

Common tools for projects

• cross-platform
• pascal-language
• library
• json

CLI bash script to optimize images in parallel easily and efficiently!

• image
• optimization
• image-optimization
• seotools

📊 Showcase your open source contributions with beautiful SVG tables. Display your merged PRs from prestigious projects.

• api
• badges
• contributions
• developer-tools

Type-safe HTML template rendering engine for Go with generics, compile-time validation and go-generate support

• code-generator
• compile-time
• developer-tools
• generics

A Python package to analyze matrix fiber orientation and intensity around cells as a proxy for cellular forces. Also measures alignment relative to X/Y axes, points and lines, with optional masks, a Python API and browser tools for analysis and group comparisons.

• imaging
• microscopy
• contractility
• collagen

DetecDiv provides a comprehensive set of tools to analyze time microscopy images using deep learning methods. The software structure is such that data can be processed either at the command line or using a graphical user-interface. Detecdiv classification models include : image classification and regression, semantic segmentation, LSTM networks to analyze data and image timeseries.