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Tags: Graphics and 3D
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457–476 of 476 · Most stars

Fungal Feature Tracker (FFT): A tool to quantitatively characterize morphology and growth of filamentous fungi

A Python package to analyze matrix fiber orientation and intensity around cells as a proxy for cellular forces. Also measures alignment relative to X/Y axes, points and lines, with optional masks, a Python API and browser tools for analysis and group comparisons.

  • contractility
  • orientation
  • fibrosis
  • mechanobiology

QuimP is software for tracking cellular shape changes and dynamic distributions of fluorescent reporters at the cell membrane.

  • cell
  • motility
  • segmentation
  • imagej