BulkFormer: A large-scale foundation model for human bulk transcriptomes
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python functions for simulating optical transfer functions
- microscopy
- numpy
The Configurable Math Library
- vector-math
- expression-template
- cplusplus-11
- graphics
slick is a simple to use polygon collision library inspired by bump.lua
This library generates graph layouts using the TikZ graph layout package.
The Massively Parallel Quantum Chemistry program, MPQC, computes properties of atoms and molecules from first principles using the time independent Schrödinger equation.
Variations on Kirby & Paris' hydra battles and other entertaining math in Coq (collaborative, documented, includes exercises) [maintainer=@Casteran]
- coq
- hydra-battles
- ordinal-notations
- formal-proofs
NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions
- computational-biology
- bioinformatics
- graph-convolution
- deep-learning
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
- r
- neuroanatomy-toolbox
- cran
- neuron
A simple, lightweight spatial hash for Lua
A library for placing labels in areas.
Fast detection of repackaged Android applications based on the comparison of resource files included into the package.
- android
- android-security
- repackaging-detection
- java
PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).
- deep-generative-model
- deep-learning
- single-cell-data-integration
- single-cell-multiomics
MAT is library for working with multi-dimensional arrays which supports efficient interfacing to foreign and CUDA code. BLAS and CUBLAS bindings are available.
An ActionScript 3 Geometry Library
Graph data structures with multiple heterogeneous metadata for Graphs.jl.
- graph
- graphs
- metadata
- juliagraphs
Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
👩💻 Matrix and other math, accelerated by WebGPU and WASM
Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders
- epigenomics
- pattern-search
- data-visualization
- interactive-machine-learning
A matrix package for common lisp building on work by Mark Hoemmen, Evan Monroig, Tamas Papp and Rif.
A open source ballistics calculator
- ballistics
- vala
- gtk3
- meson
Research experiments exploring uncommon quant techniques.
- analysis
- jupyter-notebook
- python
- quant
An open-source mathematical tire modelling library
A set of protocols for Arithmetic, Statistics and Logical operations