Repository Index

An Erlang implementation of the R*-tree spacial data structure

Elixir library implementing a parallel matrix multiplication algorithm and other utilities for working with matrices. Used for benchmarking computationally intensive concurrent code.

Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

• minerva
• microscopy
• ome
• immunofluorescence

An Elixir implementation of the CONREC algorithm for topographic or isochrone maps.

• gis
• conrec
• map
• elixir

High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations

SIMD powered simple-math numerical operations on arrays for Common Lisp through CFFI [still experimental]

• lisp
• common-lisp
• scientific-computing
• simd

Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics

Zero-dependency 128-bit fixed-point decimal for Go. Exact SQL NUMERIC / PostgreSQL semantics, no heap allocation, no panics — built for money, ledgers and banking arithmetic.

• decimal
• fixed-point
• go
• golang

An extensible .NET genetic algorithm library for optimization and artificial intelligence - Evolutionary computation and complex problem solving made simple

• artificial-intelligence
• csharp
• dotnet
• evolutionary-algorithm

Efficient and expressive arrayed vector math library with multi-threading and CUDA support in Common Lisp.

OpenCL based GPU accelerated SPH fluid simulation library

Deep learning model for single-cell inference of multi-omic profiles from a single input modality.

• single-cell
• scrna-seq
• scatac-seq
• deep-neural-networks

A powerful library extending VBA with over 100 functions for math, stats, finance, and data manipulation. It supports matrix operations, and user-defined functions, enhancing automation and analysis within Microsoft Office and LibreOffice environments for data management, financial calculations, an more.

• equation-systems
• mathematical-expression-parser
• mathematical-expressions-evaluator
• determinant-calculation

Common Lisp package for simple two dimensional computational geometry.

Working with time-dependent networks in Julia

• graph
• evolving-graphs
• julia
• network

MCP server for spatial transcriptomics analysis through natural language interfaces.

• bioinformatics
• cell-communication
• deconvolution
• machine-learning

A Julia GraphQL client for seamless integration with a server

Graph Theory [maintainers=@chdoc,@damien-pous]

• coq
• graph-theory
• mathcomp
• docker-coq-action

The d-SEAMS C++ core engine

• molecular-dynamics-simulation
• molecular-dynamics
• trajectory-analysis
• lua

Portability Environment for Fortran poor people

• fortran
• codes-portability
• precision

ChemMine Tools: open source web framework for small molecule analysis

A configurable constraint solver

Predicting Cell Health with Morphological Profiles

• carpenter-lab
• morphological-profiling
• crispr
• cell-painting

A cheminformatics extension for the SQLAlchemy database toolkit.