PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturbations at bulk and single-cell levels.
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Big Data essentials: Hadoop, MapReduce, Spark. Explore tutorials and demos in Jupyter notebooks—most are self-contained and live, ready to run with a click.
The legacy distributed object storage server developed by PitchPoint Solutions can store billions of large and small files using minimal resources. Object data is stored in replicated volumes implemented like Facebooks Haystack Object Store. Object metadata which essentially maps an object name to a volume position is stored in an elasticsearch index. (Development by PitchPoint Solutions has been discontinued)
- distributed-storage
- distributed-systems
- vertx
- rxjava
BulkFormer: A large-scale foundation model for human bulk transcriptomes
Generate random crop fields for Ignition Gazebo
Automatically version jupyter notebooks in JupyterLab
a nose plugin for finding and running IPython notebooks as nose tests
A database of paths that represent the mechanism of action from a drug to a disease in an indication.
- ncats-translator
How to create Selfie2Anime from tflite model to Android.
- tensorflow-lite
- selfie2anime
- gans
- android
Magic to display dynamic call graphs of Python function calls
- jupyter-notebook-extension
- ipython-magic
- python
- education
AuShadha (औषध): Means medicine in Sanskrit. This is a Electronic Medical Records (EMR) and Public Health Management for small clinics written in Django and Dojo
Code repository for The Automation Ahead series, showcasing practical examples for GenAI-driven automation in investments. Each installment dives into specific tools, techniques, and use cases to help professionals assess and apply GenAI effectively.
- data-science
- deep-learning
- finance
- financial-data
SplineDist: Automated Cell Segmentation with Spline Curves
Efficient, asynchronous batching and caching in clustered environments, port of Facebook DataLoader
- facebook-dataloader
- vertx-dataloader
- graphql
- java-8
Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders
- epigenomics
- pattern-search
- data-visualization
- interactive-machine-learning
Various Jupyter notebooks about Common Crawl data
- jupyter-notebook
- common-crawl
- aws-athena
- webarchiving
A simple macOS app to preview animations created with Facebook's keyframes framework
Research experiments exploring uncommon quant techniques.
- analysis
- jupyter-notebook
- python
- quant
Exercises for the lecture "Selected Topics in Audio Signal Processing"
Webpage summary extractor using Facebook Open Graph and arc90's readability
- readability
- scraper
- opengraph
Simple demo of filtering signal with an LPF and plotting its Short-Time Fourier Transform (STFT) and Laplace transform, in Python.
- stft
- hanning-window
- laplace-transform
- fft
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
- cell-annotation
- multiplexed-imaging
- mpif
A ChatGPT-based tool to decode Jupyter notebooks and the similar python notebook environments like Google Colab, etc.
Using ag-Grid in Jupyter notebooks.