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Algorand QR Code generator is a JavaScript module that outputs an standard QR code (exportable to SVG file and text) from a JSON object. It works in terminal, NodeJS and modern browsers. Complies to Algorand ABNF Grammar.

Imagej macro to calculate the MTF based on a knife edge measurement

  • imagej-macro
  • electron-microscopy
  • image-analysis
  • x-ray-imaging

Fungal Feature Tracker (FFT): A tool to quantitatively characterize morphology and growth of filamentous fungi

A Python package to analyze matrix fiber orientation and intensity around cells as a proxy for cellular forces. Also measures alignment relative to X/Y axes, points and lines, with optional masks, a Python API and browser tools for analysis and group comparisons.

  • contractility
  • orientation
  • fibrosis
  • mechanobiology

DetecDiv provides a comprehensive set of tools to analyze time microscopy images using deep learning methods. The software structure is such that data can be processed either at the command line or using a graphical user-interface. Detecdiv classification models include : image classification and regression, semantic segmentation, LSTM networks to analyze data and image timeseries.