Repository Index

2D triangulation library. Allows translating lines and polygons (both based on points) to the language of GPUs.

• triangulation
• computational-geometry
• golang

Multi-stage Riemannian flow matching for physically valid molecular docking, with GNINA scoring, PoseBusters filtering, CLI inference, and benchmarks.

• alphafold3
• docking
• drug-design
• drug-discovery

The formal proof of the Odd Order Theorem

• coq
• ssreflect
• mathcomp
• feit-thompson-theorem

A common lisp library that provides a numeric type with optional unit and/or uncertainty for computations with automatic error propagation.

Multidimensional array similar to NumPy and NArray

• matrix
• linear-algebra
• colt
• ruby

NASA/JPL SPICE Toolkit for C – patched for cross-platform compatibility

• astronomy
• astronomical-algorithms
• celestial-mechanics
• nasa

Partial Commutative Monoids

• partial-commutative-monoid
• separation-logic
• coq
• coq-library

Multigrate: multiomic data integration for single-cell genomics

📐✏️ Slides from my talk on Mathematics of Animation @ .concat() 2018

A weather server supporting Campbell Scientific and Davis Instruments stations with lots of data-sharing options

Multi-platform quantum programming library, written in TypeScript, good for JS/NodeJS

• quantum-computing
• quantum-programming-language
• quantum

🛫 Fixed-Point Decimals

• encoding
• numerics
• performance
• go

WebGL molecule viewer made with Babylon.js

Genetic Algorithm and Particle Swarm Optimization

• genetic-algorithm
• particle-swarm-optimization
• golang
• go

CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer

• cancer
• foundation-model
• single-cell

Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network

3D shape analysis using deep learning

• cancer-biology
• cell-biology
• deep-learning
• geometric-deep-learning

Small size matrix handling module with a few linear algebra operations specifically for MicroPython (Python3)

A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders

Qurry (was) a prototype for a functional quantum programming language. It incorporated many aspects of functional programming (Haskell, Clojure), but also took standard design philosophies from C++, Python, and other "traditional" languages. [category: quantum]

DE-9IM spatial predicate library implemented in Javascript.

• de-9im
• spatial
• predicates
• javascript

A implementation of Shor's algorithm written in Python calling Q# for the quantum part

• qsharp
• python3

A metaheuristic optimization framework

• optimization
• optimization-algorithms
• optimization-methods
• genetic-algorithm

Pascal library for arbitrary precision BCD floating point numbers

• pascal
• arbitrary-precision
• math
• bignumber