D3 plugin which computes a treemap based on a Voronoi tesselation
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TranslatedAcademic research library for DSH — search, cite, approve imports, hand off notes. Also: a research literature library plugin for DeepSeek Harness: search papers, include sources, approve imports into the library, and hand off note leads to other plugins in the same session.
- academic
- agentero
- ai-agents
- citations
A formalization of geometry in Coq based on Tarski's axiom system
A Python package for molecular docking with an extensive, highly-curated dataset and a set of realistic benchmark tasks for drug discovery.
scPerturb: A resource and a python/R tool for single-cell perturbation data
- cite-seq
- database
- perturbation
- scatac-seq
A Python interface to access neuroanatomical atlases
- neuroscience
- python
- microscopy
- registration
AI-based pathology predicts origins for cancers of unknown primary - Nature
- histology
- pathology
- wsi-images
- histopathology
An automatic code generator for nonlinear model predictive control (NMPC) and the continuation/GMRES method (C/GMRES) based numerical solvers for NMPC
- model-predictive-control
- nonlinear-model-predictive-control
- mpc
- nmpc
Interoperable web-based DICOM slide microscopy viewer and annotation tool
A dataset, API, and parser for USDA plant hardiness zones.
- usda
- api
- plants
- farm
🏃 The go-to single-cell Foundation Model
- batch-correction
- cell-biology
- celltype-annotation
- denoising
TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524
- self-attention
- compound-protein-interaction
- transformercpi
- structure-free-virtual-sreening
Automated 3D brain registration with support for multiple species and atlases.
- registration
- atlases
- brain
- neuroscience
SolarEstimator: pvlib-based solar estimation platform with Tkinter GUI
- activator
- application
- gui
- pvlib
Chemical 2D structure editor application/applet based on the Chemistry Development Kit
- blueobelisk
- java
- chemistry
⚡ Open-source software for deep learning-based digital pathology
- deep-learning
- machine-learning
- digital-pathology
- computational-pathology
Python package for image-based profiling
- cytominer
- microscopy
- morphological-profiling
- python
A strongly-typed genetic programming framework for Python
- python
- ipynb
- genetic-programming
- framework
:new_moon: Lune.js — Calculate the phases of the moon
- moon
- lune
- javascript
- phase
CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework
- ai4science
- llm
- multiagent-systems
- prompt-engineering
Accelerated tensor operations and dynamic neural networks based on reverse mode automatic differentiation for every device that can run Swift - from watchOS to Linux
- deep-learning
- deep-neural-networks
- gradient-descent
- automatic-differentiation
Model ChemLab: Virtual Chemistry Lab Simulation for Windows
- acid-base-titration
- download-model-chemlab
- fractional-crystallization
- home-education
A handy calculator, based on Rust and WebAssembly.
- webassembly
- calculator
- math
- rust
Rails frontend to The Genome Institute's drug gene interaction database.