Repository Index

ImageJ functions and macros for working with thermal image files

• heat-transfer
• temperature-reading
• thermal-imaging
• imagej-macro

Validator for the Brain Imaging Data Structure

• bids
• data-standards
• neuroimaging-data
• validation

ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.

• stitching
• microscopy
• microscopy-images
• fluorescence-microscopy-imaging

Tool for segmentation in bioimaging

• napari
• bioimage-analysis

Noise Correction Algorithm for sCMOS cameras

• cmos
• imaging
• noise
• readout

DICOM Honeypot

• dicom
• honeypot
• medical
• medical-imaging

Single-cell fluorescence microscopy data analysis

• microscopy
• fluorescence-microscopy-imaging

Imagej macro to calculate the MTF based on a knife edge measurement

• imagej-macro
• electron-microscopy
• image-analysis
• x-ray-imaging

mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance

• qa
• mri
• neuroimaging
• niqc

A python package to analyze the matrix fiber orientation and intensity around cells in fiber matrices (as a proxy for cellular forces).

• imaging
• microscopy
• contractility
• collagen

ucAniGifEx Animated Gif Control

• activex-control
• animated-gif
• animated-gifs
• com

🔬Python package for high-throughput single-cell imaging analysis.

• microscopy-image-analysis
• single-cell-analysis

Functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats.

• nifti
• afni
• analyze

a collection of small utlities useful for neuroimaging research

• utilities