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Tags: Science and math
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49–72 of 143 · Most stars

Generation of protein sequences and evolutionary alignments via discrete diffusion models

  • discrete-diffusion
  • generative-model
  • multiple-sequence-alignment
  • protein-sequences

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

  • variant-calling
  • genomics
  • vcf-manipulation
  • genotyping

Spatial Single Cell Analysis in Python

  • single-cell-rna-seq
  • single-cell-genomics
  • spatial-transcriptomics
  • spatial-analysis

Exascale multiphase flow solver — 2025 Gordon Bell Prize Finalist | 200T grid points on 43K+ GPUs

  • gpu
  • exascale
  • cfd
  • fortran

Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI (Nature Medicine). PLIP is a large-scale pre-trained model that can be used to extract visual and language features from pathology images and text description. The model is a fine-tuned version of the original CLIP model.

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

  • hubmap
  • imaging
  • openmicroscopy
  • ome-tiff