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49–72 of 162 · Most stars

Public/backup repository of the GROMACS molecular simulation toolkit. Please do not mine the metadata blindly; we use https://gitlab.com/gromacs/gromacs for code review and issue tracking.

QuadriFlow: A Scalable and Robust Method for Quadrangulation

  • quadriflow
  • quad
  • remeshing
  • quadrangulation

Open-source cross-platform symbolic algebra library for C# and F#. Can be used for both production and research purposes.

  • csharp
  • algebra
  • integration
  • latex

Qhull development for www.qhull.org -- Qhull 2020.2 (8.1-alpha1) at https://github.com/qhull/qhull/wiki

Robust Tetrahedral Meshing in the Wild.

  • geometry-processing
  • tetrahedral-meshing
  • surface-repair
  • 3d-triangulation

VexCL is a C++ vector expression template library for OpenCL/CUDA/OpenMP

  • opencl
  • cuda
  • c-plus-plus
  • gpgpu

RBDL is a C++ library that contains some essential and efficient rigid body dynamics algorithms such as the Articulated Body Algorithm (ABA) for forward dynamics, Recursive Newton-Euler Algorithm (RNEA) for inverse dynamics, the Composite Rigid Body Algorithm (CRBA) for the efficient computation of the joint space inertia matrix and is also able to compute forward dynamics with external contact constraints and collision impulses. Furthermore it has some basic support for forward and inverse kinematics.

  • articulated-body-algorithm
  • inverse-dynamics
  • forward-dynamics
  • multi-body-dynamics

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

  • variant-calling
  • genomics
  • vcf-manipulation
  • genotyping

🎯 A comprehensive gradient-free optimization framework written in Python

A Python platform to perform parallel computations of optimisation tasks (global and local) via the asynchronous generalized island model.

  • optimization
  • optimization-algorithms
  • optimization-methods
  • optimization-problem

A Python native dynamical system simulation framework in the block diagram paradigm.

  • blockdiagram
  • control-systems
  • hierarchical-modeling
  • nonlinear-dynamics

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.