Repository Index

A strongly-typed genetic programming framework for Python

• python
• ipynb
• genetic-programming
• framework

Scientific library for the D programming language

An Elixir library for performing 2D and 3D mathematics.

• elixir-lang
• matrices
• vector
• graphics

The Mines Java Toolkit

• geophysics
• scientific-computing
• visualization
• mines-java-toolkit

BulkFormer: A large-scale foundation model for human bulk transcriptomes

Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

• minerva
• microscopy
• ome
• immunofluorescence

Methods for Image-Based Cell Profiling

• profiling
• microscopy
• r

A powerful library extending VBA with over 100 functions for math, stats, finance, and data manipulation. It supports matrix operations, and user-defined functions, enhancing automation and analysis within Microsoft Office and LibreOffice environments for data management, financial calculations, an more.

• equation-systems
• mathematical-expression-parser
• mathematical-expressions-evaluator
• determinant-calculation

ChemMine Tools: open source web framework for small molecule analysis

A cheminformatics extension for the SQLAlchemy database toolkit.

Multi-platform quantum programming library, written in TypeScript, good for JS/NodeJS

• quantum-computing
• quantum-programming-language
• quantum

Qurry (was) a prototype for a functional quantum programming language. It incorporated many aspects of functional programming (Haskell, Clojure), but also took standard design philosophies from C++, Python, and other "traditional" languages. [category: quantum]

Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics

• bioinformatics
• cell-type-deconvolution
• computational-biology
• deconvolution

Translatedfractional api base on golang . golang math tools fractional molecular denominator fraction calculation numerator denominator operations

• fractional
• molecular
• denominator
• operation

chemmodlab: A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models

Minimization algorithms on pure Ruby

mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance

• qa
• mri
• neuroimaging
• niqc

UV-first benchmark for protein-ligand docking with reproducible annotation, pocket similarity, and HPC workflows.

• benchmark
• bioinformatics
• cheminformatics
• computational-chemistry

A common interface used for modeling Mathematical Programs (e.g., Convex Optimization problems) in the language Go (Golang).

• convex-optimization
• linear-programming
• optimization
• quadratic-programming

GNN-based gene-selection deep learning model for drug response prediction

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• ama
• physics
• programming
• parent