Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
- deep-learning
- protein-sequences
- protein-structure
- semi-supervised-learning
Repository Index
47,133 repositories indexed
49–72 of 111 · Most stars
A Modern C++ Data Sciences Toolkit
- nlp
- nlp-parsing
- search-engine
- inverted-index
Professional Blender 5.2 workflows as Agent Skills for Claude Code, Codex, Gemini CLI, Copilot and Cursor: modeling, UVs, PBR, baking, rigging, animation, export and QA.
Learn cloud security by building it! An open-source homelab teaching Zero Trust, DevSecOps, IaC, and cloud architecture from the ground up.
FiPy is a Finite Volume PDE solver written in Python
- scientific-computing
- scientific-computing-with-python
- phase-field
- materials-science
R package for web-based interactive topic model visualization.
- topic-modeling
- r
- javascript
- visualization
Sample databases for postgres
- database
- postgresql
- sample-databases
- data-modeling
Kangaroo is an AI-powered SQL client and admin tool for popular databases (MariaDB / MySQL / Oracle / PostgreSQL / Redis / SQLite / SQL Server / ...) on Windows / MacOS / Linux, support table design, query, model, sync, export/import etc, focus on comfortable, fun and developer friendly.
RNA Velocity generalized through dynamical modeling
A Python native dynamical system simulation framework in the block diagram paradigm.
- blockdiagram
- control-systems
- hierarchical-modeling
- nonlinear-dynamics
open source software for bidimensional and tridimensional remeshing
- mesh
- mesh-adaptation
- anisotropic-mesh-adaptation
- isotropic-mesh-adaptation
ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)
- clinicalbert
- hospital-readmission
- prediction
Desktop app for designing parametric 3D models in CadQuery together with the coding agent of your choice
Godot plugin for in-editor box modeling
A state-of-the-art distributed system using Reactive DDD as uncertainty modeling, Event Storming as subdomain decomposition, Event Sourcing as an eventual persistence mechanism, CQRS, Async Projections, Microservices for individual deployable units, Event-driven Architecture for efficient integration, and Clean Architecture as domain-centric design
- cqrs
- ddd
- clean-architecture
- event-sourcing
Code and data used to create the examples in "Evidence-based Software Engineering based on the publicly available data"
- cognitive-capitalism
- cognitive-science
- economic-models
- ecosystem-modeling
Developed to power Conveyal's web-based interface for scenario planning and land-use/transport accessibility analysis, R5 is our routing engine for multimodal (transit/bike/walk/car) networks with a particular focus on public transit
Deep Reinforcement Learning for de-novo Drug Design
- deeplearning
- reinforcement-learning
- cheminformatics
- molecular-modeling
PyStan, a Python interface to Stan, a platform for statistical modeling. Documentation: https://pystan.readthedocs.io
The Elevation of Privilege Threat Modeling Game
Threat modeling for AI coding agents: point Claude Code, Codex or any agent at your repo and get an evidence-traced threat model. 36 architectures, 29 methods, MIT.
Ark -- Archetype-based Entity Component System (ECS) for Go.
- ecs
- entity-component-system
- go
- golang
City Energy Analyst (CEA) is an open-source urban building energy modeling (UBEM) platform and computation tool for the design of low-carbon and highly efficient cities.
- python
- urban-design
- urban-analytics
- ubem
The Geospatial Neighborhood Analysis Package
- spatial-analysis
- urban-modeling
- geodemographics
- neighborhood-dynamics