Data logistics system enabling real-time pathogen surveillance. Built for the Seattle Flu Study.
- postgres
- postgresql
- python
- infectious-disease
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Official implementation of JAMIE, Joint variational Autoencoders for Multimodal Imputation and Embedding
- autoencoder
- imputation
- integration
- multimodal
A flexible Julia toolkit for high-dimensional cellular profiles
- julia
- morphological-analysis
- high-content-screening
DetecDiv provides a comprehensive set of tools to analyze time microscopy images using deep learning methods. The software structure is such that data can be processed either at the command line or using a graphical user-interface. Detecdiv classification models include : image classification and regression, semantic segmentation, LSTM networks to analyze data and image timeseries.
Interpretable modeling of cellular responses to drug perturbations using cycle consistence learning
gateway for segmentation data to Rstats & visualization with ggplot2 - in development
- visualization
- fluorescence-data
- ggplot
DeepAEG: A model for predicting cancer drug response based on data enhancement and edge-collaborative update strategies