Interactive network visualization in Python and Dash, powered by Cytoscape.js
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Repository Index
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The Point Processing Toolkit (pptk) is a Python package for visualizing and processing 2-d/3-d point clouds.
- pointclouds
- 3-d
- visualization
- lidar
2D/3D simplicial mesh generator interface for Python (Triangle, TetGen, gmsh)
- python
- mesh-generation
- scientific-computing
- triangle
Junction Tree Variational Autoencoder for Molecular Graph Generation (ICML 2018)
A Euclidean diffusion model for structure-based drug design.
- ddpm
- drug-design
- equivariance
- generative-model
Graph-linked unified embedding for single-cell multi-omics data integration
- bioinformatics
- deep-learning
- single-cell
- single-cell-multiomics
A thin layer of graphic data types
- graphics-library
- vector
- transformations
- matrix
A library designed to ease geographic coordinate format conversions, and determine sun/moon information in C#
- moon
- coordinates
- longitude
- latitude
GraphDTA: Predicting drug-target binding affinity with graph neural networks
Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging. The name Kaapana comes from the Hawaiian word kaʻāpana, meaning "distributor" or "part".
- imaging
- ai
- cloud-computing
- medical-imaging
Schema and generated objects for biolink data model and upper ontology
- biolink
- monarchinitiative
- gene-ontology
- datamodel
Graph-based molecule modeling toolkit for cheminformatics
- cheminformatics
- molecular-modeling
- chemistry
- toolkit
A gallery of animations in statistics and utilities to create animations
- r
- r-package
- animation
- statistics
Medical LLM agent and MRI segmentation workspace built on PharmaLLM, with LangGraph, vLLM, and BEU-Net.
Wrapper for RDKit's RunReactants to improve stereochemistry handling
MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in biomedical applications.
OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.
Type-safe dependency injection singleton wrapper with lazy init and generic constructor support
- activator
- dependency-injection
- instantiation
- lazy-loading
Astrophotography capture and processing
a physics library wrapper for love2d
Learning cell communication from spatial graphs of cells
- tensorflow
- gnn
- glm
- cvae
Graph and Network algorithms in Julia
Layout algorithms for graphs and trees in pure Julia.
- graph-visualization
Advanced Windows Mathematics Education Tool with Computational Engine and 2D/3D Visualization
- 2d-graphic-viewer
- 3d-graphic-viewer
- engineers-software
- equation-editor