Repository Index

A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources

• bioimage-analysis
• cell-classification
• computer-vision
• digital-pathology

A common lisp library that provides a numeric type with optional unit and/or uncertainty for computations with automatic error propagation.

NASA/JPL SPICE Toolkit for C – patched for cross-platform compatibility

• astronomy
• astronomical-algorithms
• celestial-mechanics
• nasa

A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders

Single-cell fluorescence microscopy data analysis

• microscopy
• fluorescence-microscopy-imaging

Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.

• microscopy
• image-processing
• segmentation
• biology

mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance

• qa
• mri
• neuroimaging
• niqc

Simple, reliable .NET libraries covering numbers, geometry and data structures

• collections
• geometry
• numerics
• csharp

DetecDiv provides a comprehensive set of tools to analyze time microscopy images using deep learning methods. The software structure is such that data can be processed either at the command line or using a graphical user-interface. Detecdiv classification models include : image classification and regression, semantic segmentation, LSTM networks to analyze data and image timeseries.

Vendor-agnostic, FHIR-Genomics-aligned API contract for cross-vendor NGS interpretation. JSON Schema + TypeScript + Python pydantic.

Python library for statistical analysis of mRNA and protein distributions in fluorescent microscopy images

Genetic Algorithm Implementation for Ada

• generic
• algorithm
• ada
• library