Repository Index

Syre workspace.

• science

Toolbox for the analysis of smFISH images.

• pattern-classification
• rna-localization
• segmentation
• smfish

A simple, lightweight spatial hash for Lua

Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications

• cell-annotation
• multiplexed-imaging
• mpif

An Erlang implementation of the R*-tree spacial data structure

Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics

Tiny header-only C++17 library for lat/lng geometry: distance, bearing, area, point-in-polygon and path proximity

• cpp
• geometry
• geospatial
• gis

MCP server for spatial transcriptomics analysis through natural language interfaces.

• bioinformatics
• cell-communication
• deconvolution
• machine-learning

Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network

DE-9IM spatial predicate library implemented in Javascript.

• de-9im
• spatial
• predicates
• javascript

A Swift Playground visualizing gravity based on Einstein's Theory of General Relativity

Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics

• bioinformatics
• cell-type-deconvolution
• computational-biology
• deconvolution

Astronomical FITS image analysis tool for detecting asteroids, comets, satellites, moving objects, and transients in astrophotography data.

• astronomy
• astronomy-software
• astrophotography
• moving-object-detection

XitoSBML - the spatial SBML plugin for ImageJ

• sbml
• systems-biology
• spatial-sbml-plugin
• imagej