Repository Index

Development tool for CAN bus simulation

• automotive
• can
• can-bus
• genivi

Immutable in-memory R-tree and R*-tree implementations in Java with reactive api

A lean C++ library for working with point cloud data

• point-cloud
• icp
• ransac
• convex-hull

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

• workflow-execution
• workflow
• cloud
• hpc

This rocq library aims to formalize a substantial body of mathematics using the univalent point of view.

• coq
• mathematics
• unimath
• coq-library

2D/3D geometry toolkit for Clojure/Clojurescript

• geometry
• visualization
• mesh-generation
• opengl

flybrainlabs authority nodes, complete simulation replay, archives, and service APIs.

Public/backup repository of the GROMACS molecular simulation toolkit. Please do not mine the metadata blindly; we use https://gitlab.com/gromacs/gromacs for code review and issue tracking.

:christmas_tree:Visualization and annotation of phylogenetic trees

• r
• visualization
• phylogenetic-trees
• annotations

Wallet UI simulation tool for BTC, ETH, SOL, XRP, and 200+ assets. Customize displayed balances in a controlled demo environment with persistent visual settings and screenshot-ready previews. Designed for testing, demonstrations, and UI prototyping without altering actual blockchain balances or transactions.

• bitcoin-transaction-tool
• browser-crypto-wallet
• crypto-broadcast-api
• electrum-payment

C++ library for solving large sparse linear systems with algebraic multigrid method

• amg
• c-plus-plus
• sparse-linear-systems
• opencl

3D medical imaging reconstruction software

• dicom
• dicom-viewer
• magnetic-resonance-imaging
• medical-image-processing

Pathology Foundation Model - Nature Medicine

• foundation
• foundation-model
• histopathology
• mahmoodlab

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

• deep-learning
• protein-sequences
• protein-structure
• semi-supervised-learning

A flexible framework for solving PDEs with modern spectral methods.

• spectral-methods
• fluid-dynamics
• pde-solver

Generation of protein sequences and evolutionary alignments via discrete diffusion models

• discrete-diffusion
• generative-model
• multiple-sequence-alignment
• protein-sequences

Interactive network visualization in Python and Dash, powered by Cytoscape.js

• plotly-dash
• plotly
• dash
• cytoscape

Nonconvex embedded optimization: code generation for fast real-time optimization + ROS support

• embedded-optimization
• nonconvex
• model-predictive-control
• rust-library

The Point Processing Toolkit (pptk) is a Python package for visualizing and processing 2-d/3-d point clouds.

• pointclouds
• 3-d
• visualization
• lidar

A Swift micro library for generating Sunrise and Sunset times on device, requiring no network access.

• swift
• sunrise
• sunset
• ios

Spatial Single Cell Analysis in Python

• single-cell-rna-seq
• single-cell-genomics
• spatial-transcriptomics
• spatial-analysis

ACADO Toolkit is a software environment and algorithm collection for automatic control and dynamic optimization. It provides a general framework for using a great variety of algorithms for direct optimal control, including model predictive control, state and parameter estimation and robust optimization.

A pure JavaScript medical research image viewer.

Main yt repository

• data
• visualization
• analysis
• python