Chai-1, SOTA model for biomolecular structure prediction
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A full spaCy pipeline and models for scientific/biomedical documents.
- scientific-documents
- spacy
- custom-pipes
- nlp
ActorDB distributed SQL database
Generate your Twitter bio with AI
BirdNET analyzer for scientific audio data processing.
- bioacoustics
- birds
- birdsong
- acoustic-monitoring
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
- diffusion-models
- docking
- binding
- computational-biology
Biological foundation modeling from molecular to genome scale
StarDist - Object Detection with Star-convex Shapes
- bioimage-analysis
- cell-segmentation
- nuclei-segmentation
- object-detection
GemRB is a portable open-source implementation of Bioware’s Infinity Engine.
- c-plus-plus
- python
- isometric
- game-engine
Brian is a free, open source simulator for spiking neural networks.
- python
- neuroscience
- science
- differential-equations
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
- drug-repurposing
- deep-learning
- drug-target-interactions
- toolkit
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.
- ai-agents
- bioinformatics
- equity
- genomics
An open-source application for biological image analysis
A fast, multi-threaded Redis® and Valkey alternative written in Rust: drop-in compatible, with full-text and vector search built in
- database
- drop-in-replacement
- in-memory
- kividb
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Cloud-native genomic dataframes and batch computing
- genetics
- vcf
- genomics
- gwas
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
WebGL accelerated JavaScript molecular graphics library
- molecular-graphics
- molecular-modeling
- computational-biology
- computational-chemistry
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
A list of schools and researchers in computational neuroscience
- awesome-list
- awesome
- computational-neuroscience
- neuroscience
Cloud Native Application Bundle Specification
C library for high-throughput sequencing data formats
- htslib
- bioinformatics
- sam
- bam
Foundation Models for Genomics & Transcriptomics
ImageWorkshop is a PHP5.3+ library that helps you to manage images based on GD library