Umbrella package of the 'spatstat' family................
- r
- spatial-analysis
- spatial-data
- spatstat
Repository Index
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A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
Free (GPL) Common Lisp data analysis library with emphasis on modularity and conceptual clarity.
scPerturb: A resource and a python/R tool for single-cell perturbation data
- cite-seq
- database
- perturbation
- scatac-seq
A Python package for molecular docking with an extensive, highly-curated dataset and a set of realistic benchmark tasks for drug discovery.
MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in biomedical applications.
Molecule Validation and Standardization
- rdkit
- python
- chemistry
- cheminformatics
ChemML is a machine learning and informatics program suite for the chemical and materials sciences.
- quantum-mechanics
- materials-informatics
- data-science
- machine-learning
Repository for Nicheformer: a foundation model for single-cell and spatial omics
Interoperable web-based DICOM slide microscopy viewer and annotation tool
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
- cellprofiler-analyst
- cellprofiler
- image-analysis
- machine-learning
A python Two Source Energy Balance model for estimation of evapotranspiration with remote sensing data
- source-energy-balance
- canopy
- soil
- radiometric-temperatures
Schema and data analyzer for MongoDB written in Go.
A dataset, API, and parser for USDA plant hardiness zones.
- usda
- api
- plants
- farm
OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.
🏃 The go-to single-cell Foundation Model
- batch-correction
- cell-biology
- celltype-annotation
- denoising
Scientific computing in pure Crystal
- crystal
- linear-algebra
- machine-learning
- autograd
Data visualisation web components for the life sciences.
- biohackeu21
- bioinformatics
- visualization
- webcomponents
Date and time manipulation for modern Fortran
- fortran
- datetime
- timedelta
- strftime
Accurate and efficient spot detection for microscopy data
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
- neuroimaging
- reproducibility
- pipeline
- meta-analysis
CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework
- ai4science
- llm
- multiagent-systems
- prompt-engineering
Syre workspace.
Data Access Client for Global Surface Summary of the Day (GSOD) Weather Written in R
- r
- weather-data
- gsod
- ncdc