ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
- neuroimaging
- reproducibility
- pipeline
- meta-analysis
Repository Index
47,133 repositories indexed
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CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework
- ai4science
- llm
- multiagent-systems
- prompt-engineering
Syre workspace.
Data Access Client for Global Surface Summary of the Day (GSOD) Weather Written in R
- r
- weather-data
- gsod
- ncdc
Rails frontend to The Genome Institute's drug gene interaction database.
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
- r
- neuroanatomy-toolbox
- cran
- neuron
PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).
- deep-generative-model
- deep-learning
- single-cell-data-integration
- single-cell-multiomics
Graph data structures with multiple heterogeneous metadata for Graphs.jl.
- graph
- graphs
- metadata
- juliagraphs
Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders
- epigenomics
- pattern-search
- data-visualization
- interactive-machine-learning
Classification and Gradient-based Localization of Chest Radiographs using PyTorch.
- fine-tuning
- vgg16
- resnet18
- densenet121
An Erlang implementation of the R*-tree spacial data structure
A powerful library extending VBA with over 100 functions for math, stats, finance, and data manipulation. It supports matrix operations, and user-defined functions, enhancing automation and analysis within Microsoft Office and LibreOffice environments for data management, financial calculations, an more.
- equation-systems
- mathematical-expression-parser
- mathematical-expressions-evaluator
- determinant-calculation
A cheminformatics extension for the SQLAlchemy database toolkit.
Generic, zero-alloc, 100%-test covered Quadtree for golang
- golang-library
- quadtree
- data-structures
- generics
Multidimensional array similar to NumPy and NArray
- matrix
- linear-algebra
- colt
- ruby
Multigrate: multiomic data integration for single-cell genomics
A weather server supporting Campbell Scientific and Davis Instruments stations with lots of data-sharing options
Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network
Single-cell fluorescence microscopy data analysis
- microscopy
- fluorescence-microscopy-imaging
Java Scientific Computing Library - Signal Processing, FFT, Filters, PSD, DCT, SciPy-like APIs for JVM & Android used in Machine Learning and Data Science.
- android
- java
- python
- scipy
Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
- microscopy
- image-processing
- segmentation
- biology
Nova DSO Tracker is an open-source Flask application for astrophotographers, providing real-time tracking of deep-sky objects' altitude, observability prediction, and integration with Stellarium and SIMBAD databases.
Data logistics system enabling real-time pathogen surveillance. Built for the Seattle Flu Study.
- postgres
- postgresql
- python
- infectious-disease
Crystal implementation of "K-Dimensional Tree" and "N-Nearest Neighbors"
- crystal
- k-dimensional
- data-structures
- tree-structure