Repository Index

UCE is a zero-shot foundation model for single-cell gene expression data

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One open-source modeler for structures, heat and fluids, built from scratch in pure Rust: parametric part in, verified results out. Automatic all-hex and tet meshing, our own nonlinear implicit and explicit FEA, heat transfer and lattice Boltzmann CFD — every result checked against theory. For engineers and AI agents alike. Free, forever.

• cae
• cfd
• computational-mechanics
• explicit-dynamics

Genetic Algorithm for solving optimization of trading strategies using Gekko

Ark -- Archetype-based Entity Component System (ECS) for Go.

• ecs
• entity-component-system
• go
• golang

A generic interface for the environmental perception of automated driving functions in virtual scenarios.

• asam
• osi
• open-simulation-interface
• simulation

Open Frontier Biomolecular Intelligence

Schema and generated objects for biolink data model and upper ontology

• biolink
• monarchinitiative
• gene-ontology
• datamodel

Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

• histology
• wsi-images
• pan-cancer-analysis
• genomics

Correctly rounded decimals for Go

• decimal
• financial
• floating-point
• general-decimal-arithmetic

Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome

• cancer-genomics
• cnv-detection
• single-cell
• phylogeny

High performance computational platform in Python for the spectral Galerkin method

• spectral-methods
• galerkin
• fenics
• turbulence

Wide-Integer implements a generic C++ template for uint128_t, uint256_t, uint512_t, uint1024_t, etc.

• high-performance
• embedded-systems
• multiprecision
• numerical

Golang Genetic Algorithm

:spider_web: Simple mesh generator inspired by distmesh.

• mesh
• finite-elements
• mathematics
• mesh-generation

Genetic Algorithms library written in Go / golang

Medical LLM agent and MRI segmentation workspace built on PharmaLLM, with LangGraph, vLLM, and BEU-Net.

A general library for geometry operations of union, intersections, difference, and xor

• computational-geometry
• union
• intersection
• xor

:triangular_ruler: Orthogonal polynomials in all shapes and sizes.

• python
• mathematics
• engineering
• physics

The implementation code for "DAGAN: Deep De-Aliasing Generative Adversarial Networks for Fast Compressed Sensing MRI Reconstruction"

• generative-adversarial-network
• mri-reconstruction
• computer-vision
• deep-learning

An automatic code generator for nonlinear model predictive control (NMPC) and the continuation/GMRES method (C/GMRES) based numerical solvers for NMPC

• model-predictive-control
• nonlinear-model-predictive-control
• mpc
• nmpc

PhyloNetworks: a julia package with utilities for phylogenetic networks

OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.

🏃 The go-to single-cell Foundation Model

• batch-correction
• cell-biology
• celltype-annotation
• denoising