MCP server for spatial transcriptomics analysis through natural language interfaces.
- bioinformatics
- cell-communication
- deconvolution
- machine-learning
Repository Index
78,351 visible repositories in the index
73–80 of 80 · Most stars
Tool for segmentation in bioimaging
- napari
- bioimage-analysis
A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources
- bioimage-analysis
- cell-classification
- computer-vision
- digital-pathology
Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics
- bioinformatics
- cell-type-deconvolution
- computational-biology
- deconvolution
Provides a template makefile for add quickly a build sytem for your project
UV-first benchmark for protein-ligand docking with reproducible annotation, pocket similarity, and HPC workflows.
- benchmark
- bioinformatics
- cheminformatics
- computational-chemistry
Mongoengine Pyramid extension
- python
- pyramid-mongoengine
- pyramid
- mongodb
Bioinformatics-themed kata for practicing string manipulation in a data transformation pipeline. Contains replit files to work quickly in an online dojo setting.
- kata
- challenge
- python
- bioinformatics