Repository Index

Tool for precise, interactive, fast and scalable FISH spot detection

Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics

The repository host gives no description.

ChemMine Tools: open source web framework for small molecule analysis

Predicting Cell Health with Morphological Profiles

• carpenter-lab
• morphological-profiling
• crispr
• cell-painting

Multigrate: multiomic data integration for single-cell genomics

CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer

• cancer
• foundation-model
• single-cell

Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network

chemmodlab: A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models

mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance

• qa
• mri
• neuroimaging
• niqc

A flexible Julia toolkit for high-dimensional cellular profiles

• julia
• morphological-analysis
• high-content-screening

DetecDiv provides a comprehensive set of tools to analyze time microscopy images using deep learning methods. The software structure is such that data can be processed either at the command line or using a graphical user-interface. Detecdiv classification models include : image classification and regression, semantic segmentation, LSTM networks to analyze data and image timeseries.

Histology Topography Cytometry Analysis Toolbox

Interpretable modeling of cellular responses to drug perturbations using cycle consistence learning

Accelerated similarity searching of small molecules (bioconductor package)

DeepAEG: A model for predicting cancer drug response based on data enhancement and edge-collaborative update strategies

legacy signal processing leveraging afni, ants, fsl, nipy, robex, and wavelet toolbox - brnfswdktm

• fmri-preprocessing
• fmri