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Tags: Science and math
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73–96 of 144 · Most stars

Open source math and physics engine that executes MATLAB-syntax code. Features a modern compiler, automatic GPU acceleration for large calculations, and support for math on geometry / FEA calculations.

Schema and generated objects for biolink data model and upper ontology

  • biolink
  • monarchinitiative
  • gene-ontology
  • datamodel

Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome

  • cancer-genomics
  • cnv-detection
  • single-cell
  • phylogeny

High performance computational platform in Python for the spectral Galerkin method

  • spectral-methods
  • galerkin
  • fenics
  • turbulence

a unified framework for modeling chemically reactive systems

  • chemical-equilibrium
  • chemical-kinetics
  • reactive-transport
  • chemical-reactions

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk

An automatic code generator for nonlinear model predictive control (NMPC) and the continuation/GMRES method (C/GMRES) based numerical solvers for NMPC

  • model-predictive-control
  • nonlinear-model-predictive-control
  • mpc
  • nmpc

OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.

Interpretable bilinear attention network with domain adaptation improves drug-target prediction.