47,133 repositories indexed
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One open-source modeler for structures, heat and fluids, built from scratch in pure Rust: parametric part in, verified results out. Automatic all-hex and tet meshing, our own nonlinear implicit and explicit FEA, heat transfer and lattice Boltzmann CFD — every result checked against theory. For engineers and AI agents alike. Free, forever.
Ark -- Archetype-based Entity Component System (ECS) for Go.
Native R and Python sample-deletion robustness for omics: candidate certificates, minimum deletion bounds, Bioconductor model refits and donor-level pseudobulk
City Energy Analyst (CEA) is an open-source urban building energy modeling (UBEM) platform and computation tool for the design of low-carbon and highly efficient cities.
Mundo: Customized World Model
Open source math and physics engine that executes MATLAB-syntax code. Features a modern compiler, automatic GPU acceleration for large calculations, and support for math on geometry / FEA calculations.
Schema and generated objects for biolink data model and upper ontology
Bi-Directional Equivariant Long-Range DNA Sequence Modeling
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
Ankh: Optimized Protein Language Model
Graph-based molecule modeling toolkit for cheminformatics
a unified framework for modeling chemically reactive systems
Umbrella package of the 'spatstat' family................
Free (GPL) Common Lisp data analysis library with emphasis on modularity and conceptual clarity.
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
An automatic code generator for nonlinear model predictive control (NMPC) and the continuation/GMRES method (C/GMRES) based numerical solvers for NMPC
Repository for Nicheformer: a foundation model for single-cell and spatial omics
A python Two Source Energy Balance model for estimation of evapotranspiration with remote sensing data
OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.
🏃 The go-to single-cell Foundation Model
Batched NVIDIA MotionBricks: generate the motion of hundreds of characters in one model call.
Mission-control style spacecraft tracker in Rust: live ISS, Dragon, Hubble, JWST and Roman orbits, passes and schedules. Retro CRT themes, and a mode for Raspberry Pi + composite CRT.
Date and time manipulation for modern Fortran
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design