Repository Index

An Elixir library for performing 2D and 3D mathematics.

• elixir-lang
• matrices
• vector
• graphics

TypeDB Bio: Biomedical Knowledge Graph

• bioinformatics
• knowledge-graph
• knowledge-base
• drug-discovery

The Configurable Math Library

• vector-math
• expression-template
• cplusplus-11
• graphics

This library generates graph layouts using the TikZ graph layout package.

NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions

• computational-biology
• bioinformatics
• graph-convolution
• deep-learning

Graph data structures with multiple heterogeneous metadata for Graphs.jl.

• graph
• graphs
• metadata
• juliagraphs

Classification and Gradient-based Localization of Chest Radiographs using PyTorch.

• fine-tuning
• vgg16
• resnet18
• densenet121

An Elixir implementation of the CONREC algorithm for topographic or isochrone maps.

• gis
• conrec
• map
• elixir

Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics

Working with time-dependent networks in Julia

• graph
• evolving-graphs
• julia
• network

Native Haxe functions for graphical linear algebra (à la GLM: https://github.com/g-truc/glm/tree/master/glm)

A Julia GraphQL client for seamless integration with a server

Graph Theory [maintainers=@chdoc,@damien-pous]

• coq
• graph-theory
• mathcomp
• docker-coq-action

💬 Trace citation chains for any concept across research papers and render them as an interactive graph.

• academic-research
• bibliography
• citation-graph
• cli

Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network

PyTorch implementation of "TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarity Augmentation"

Nova DSO Tracker is an open-source Flask application for astrophotographers, providing real-time tracking of deep-sky objects' altitude, observability prediction, and integration with Stellarium and SIMBAD databases.

• astrophotography
• astronomy
• ephem
• flask

ODE system solver made simple. For IVPs (initial value problems).

• runge-kutta-fehlberg
• runge-kutta
• simulation
• ode-solver

Coq formalization of algorithms due to Tarjan and Kosaraju for finding strongly connected graph components using Mathematical Components and SSReflect [maintainers=@CohenCyril,@palmskog]

• coq
• mathcomp
• ssreflect
• tarjan-algorithm

Astronomical FITS image analysis tool for detecting asteroids, comets, satellites, moving objects, and transients in astrophotography data.

• astronomy
• astronomy-software
• astrophotography
• moving-object-detection

DetecDiv provides a comprehensive set of tools to analyze time microscopy images using deep learning methods. The software structure is such that data can be processed either at the command line or using a graphical user-interface. Detecdiv classification models include : image classification and regression, semantic segmentation, LSTM networks to analyze data and image timeseries.

Histology Topography Cytometry Analysis Toolbox

Caustic Elixir Cryptocurrency Library (Bitcoin, Ethereum, etc.) with extensive cryptography and number theory library

Interpretable drug response prediction with graph neural networks over drugs, cell lines, and genes.