Repository Index

An interactive image processing program for biologists written in Python.

• biologists
• python
• imagej
• calcium

Z-stack Depth Colorcode ImageJ FIJI plugin

• imagej-plugin
• colorcode
• fiji
• imagej

Imagej macro to calculate the MTF based on a knife edge measurement

• imagej-macro
• electron-microscopy
• image-analysis
• x-ray-imaging

AS3 SVG parser to FIVe3D and HTML5 canvas

Cross-platform C++ framework that allows you to quickly initialize Vulkan and provides easy-to-use abstraction above main objects

• cplusplus
• cplusplus-17
• cpp
• fast

A Python package to analyze matrix fiber orientation and intensity around cells as a proxy for cellular forces. Also measures alignment relative to X/Y axes, points and lines, with optional masks, a Python API and browser tools for analysis and group comparisons.

• imaging
• microscopy
• contractility
• collagen

#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720

• segmentation
• image-processing
• zebrafish
• vasculature

DetecDiv provides a comprehensive set of tools to analyze time microscopy images using deep learning methods. The software structure is such that data can be processed either at the command line or using a graphical user-interface. Detecdiv classification models include : image classification and regression, semantic segmentation, LSTM networks to analyze data and image timeseries.

Capacitor plugin for efficient image compression supporting PNG, JPEG, and WebP formats across iOS, Android, and Web platforms

🔬Python package for high-throughput single-cell imaging analysis.

• microscopy-image-analysis
• single-cell-analysis

Python library for statistical analysis of mRNA and protein distributions in fluorescent microscopy images