Repository Index

Scientific computing in pure Crystal

• crystal
• linear-algebra
• machine-learning
• autograd

Automated 3D brain registration with support for multiple species and atlases.

• registration
• atlases
• brain
• neuroscience

Data visualisation web components for the life sciences.

• biohackeu21
• bioinformatics
• visualization
• webcomponents

Date and time manipulation for modern Fortran

• fortran
• datetime
• timedelta
• strftime

Inner ear models for Python

• python
• cochlea
• inner-ear
• model

CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework

• ai4science
• llm
• multiagent-systems
• prompt-engineering

Syre workspace.

• science

Cumo (pronounced like "koomo") is CUDA aware numerical library whose interface is highly compatible with Ruby Numo

• ruby
• cuda
• numo
• scicentific-computing

Data Access Client for Global Surface Summary of the Day (GSOD) Weather Written in R

• r
• weather-data
• gsod
• ncdc

Scientific library for the D programming language

The Mines Java Toolkit

• geophysics
• scientific-computing
• visualization
• mines-java-toolkit

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

• r
• neuroanatomy-toolbox
• cran
• neuron

The framework for quantification of neuronal anatomy

• neuroscience
• neuroanatomy-toolbox
• imagej
• imagej2

SIMD powered simple-math numerical operations on arrays for Common Lisp through CFFI [still experimental]

• lisp
• common-lisp
• scientific-computing
• simd

Tool for precise, interactive, fast and scalable FISH spot detection

A powerful library extending VBA with over 100 functions for math, stats, finance, and data manipulation. It supports matrix operations, and user-defined functions, enhancing automation and analysis within Microsoft Office and LibreOffice environments for data management, financial calculations, an more.

• equation-systems
• mathematical-expression-parser
• mathematical-expressions-evaluator
• determinant-calculation

Multidimensional array similar to NumPy and NArray

• matrix
• linear-algebra
• colt
• ruby

A weather server supporting Campbell Scientific and Davis Instruments stations with lots of data-sharing options

Java Scientific Computing Library - Signal Processing, FFT, Filters, PSD, DCT, SciPy-like APIs for JVM & Android used in Machine Learning and Data Science.

• android
• java
• python
• scipy

An effort to consolidate the needs and plans of individuals and organizations using Common Lisp to meet their numerical and scientific computing needs.

The repository host gives no description.

mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance

• qa
• mri
• neuroimaging
• niqc

Minimization algorithms on pure Ruby

:game_die: Neutrino research

• physics
• neutrino
• neutrino-oscillations