Repository Index

Implementation for PolarNet: An Improved Grid Representation for Online LiDAR Point Clouds Semantic Segmentation (CVPR 2020)

The LiDAR segmenters library, for segmentation-based detection.

• lidar-segmenters-library
• ros
• detection
• ground-segmenters

CellViT: Vision Transformers for Precise Cell Segmentation and Classification

• ai
• cell
• digitalpathology
• microscopy

Real-time LIDAR-based Urban Road and Sidewalk detection for Autonomous Vehicles 🚗

• road-segmentation
• lidar
• point-cloud
• ros

AgML is a centralized framework for agricultural machine learning. AgML provides access to public agricultural datasets for common agricultural deep learning tasks, with standard benchmarks and pretrained models, as well the ability to generate synthetic data and annotations.

• deep-learning
• agriculture
• pytorch
• dataset

The example project of inferencing Semantic Segementation using Core ML

ROS package for the Perception (Sensor Processing, Detection, Tracking and Evaluation) of the KITTI Vision Benchmark Suite

• ros
• ros-kinetic
• ros-packages
• rviz

Deep and Machine Learning for Microscopy

• microscopy
• materials
• machine-learning
• materials-science

Codebase for "A Foundation Model for Cell Segmentation"

TranslatedAn industrial anomaly detection project based on PatchCore, studying layer2/layer3 score fusion, sensitivity-guided shrinkage, and risk-controlled gating, and providing an engineering-oriented Streamlit demo.

• anomaly-detection
• computer-vision
• feature-fusion
• industrial-anomaly-detection

Cell tracking and segmentation software

• cell-segmentation
• cell-tracking
• cell-tracking-challenge
• gurobi

Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning

• tensorflow
• python3
• keras
• resnet-101

A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data

PyTorch Connectomics: segmentation toolbox for EM connectomics

• computer-vision
• neuroscience
• connectomics
• pytorch

Medical LLM agent and MRI segmentation workspace built on PharmaLLM, with LangGraph, vLLM, and BEU-Net.

Probabilistic cell segmentation for in situ spatial transcriptomics

Crop/Weed Field Image Dataset

• dataset
• crop
• paper
• agriculture

A tool for cell instance aware segmentation in densely packed 3D volumetric images

• segmentation
• deep-learning
• bioinformatics
• neural-network

Axon/Myelin segmentation using Deep Learning

• deep-learning
• machine-learning
• myelin
• axon

Collection of mathematical morphology methods and plugins for ImageJ

• image-processing
• image-analysis
• imagej
• fiji

Fiji library to perform image segmentation based on the Weka learning schemes

Agent skill: outline, mask and count objects in photos with Meta's SAM 3 on your own NVIDIA GPU, with review, exports and a viewer. Works with Claude Code, Codex, Cursor, Pi and other Agent Skills clients.

• agent-skills
• annotation
• claude-code
• claude-code-plugin

Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

• biology
• fluorescence
• image-analysis
• image-processing

R package for segmentation, registration and generating web-based brain atlases from microscope images