Probabilistic cell segmentation for in situ spatial transcriptomics
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A Network Integration Approach for Drug-Target Interaction Prediction
scPerturb: A resource and a python/R tool for single-cell perturbation data
- cite-seq
- database
- perturbation
- scatac-seq
The official NFFT library repository
- nfft
- fftw
- fourier-transform
- c
AI-based pathology predicts origins for cancers of unknown primary - Nature
- histology
- pathology
- wsi-images
- histopathology
Open source tumor evidence matching for sequencing labs and hospitals without molecular tumor boards. Research prototype; oncologist review required.
- bioinformatics
- cancer-research
- computational-biology
- drug-repurposing
Trick Simulation Environment. Trick provides a common set of simulation capabilities and utilities to build simulations automatically.
ChemML is a machine learning and informatics program suite for the chemical and materials sciences.
- quantum-mechanics
- materials-informatics
- data-science
- machine-learning
An automatic code generator for nonlinear model predictive control (NMPC) and the continuation/GMRES method (C/GMRES) based numerical solvers for NMPC
- model-predictive-control
- nonlinear-model-predictive-control
- mpc
- nmpc
Repository for Nicheformer: a foundation model for single-cell and spatial omics
The repository host gives no description.
Interoperable web-based DICOM slide microscopy viewer and annotation tool
A library of abstract interfaces for mathematical structures in Coq [maintainer=@spitters,@Lysxia]
- coq-library
- typeclasses
- mathematics
- coq
Fork of https://gitlab.mpcdf.mpg.de/mtr/pocketfft to simplify external contributions
🏃 The go-to single-cell Foundation Model
- batch-correction
- cell-biology
- celltype-annotation
- denoising
Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
- disentanglement
- drug-discovery
- genomics
- perturbation
TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524
- self-attention
- compound-protein-interaction
- transformercpi
- structure-free-virtual-sreening
Optimising chemical reactions using machine learning
- chemistry
- machine-learning
- optimization
- bayesian-optimization
TUM Roborace Team Software Stack - Vehicle Simulation
Interpretable bilinear attention network with domain adaptation improves drug-target prediction.
Accurate and efficient spot detection for microscopy data
A library of mechanised undecidability proofs in the Coq proof assistant.
RTree2D is a 2D immutable R-tree for ultra-fast nearest and intersection queries in plane and spherical coordinates
- scala
- rtree
- 2d
- str
The repository host gives no description.