Cell-by-cell testing for production Jupyter notebooks in JupyterLab
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This project is an add-on for the excellent J2V8 Project. It allows users to debug JS running in V8 using Chrome DevTools. Uses Stetho for communication with Chrome DevTools.
PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturbations at bulk and single-cell levels.
A library for building excellent user experiences with Stacks.
- blockstack
- typescript
- blockchain
- decentralized
A project about the Swift programming language
- swift
Simple, efficient Excel to POJO library for Java
- java8
- excel
- pojo
- annotation-processor
Autonomous multi-agent framework to optimize scientific software
- acceleration
- agentic-ai
- ai-agents
- bioinformatics
PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).
- deep-generative-model
- deep-learning
- single-cell-data-integration
- single-cell-multiomics
SplineDist: Automated Cell Segmentation with Spline Curves
Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
MicroPython driver for the HX711 load cell interface.
Planning Poker 4 Azure
- asp-net-core
- blazor
- azure
- c-sharp
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
- cell-annotation
- multiplexed-imaging
- mpif
UICollectionViewCell with checkbox when it isSelected and empty circle when not - like Photos.app "Select" mode.
- uicollectionview
- checkmark
- uicollectionviewcell
- swift
Read and write Excel (.xlsx, .xls), CSV, and ODS files in Java with one line of code. Annotation-based mapping, SAX streaming, built-in validation, 19 type converters, cell styling. A high-performance alternative to Apache POI.
- annotation
- apache-poi
- csv
- data-processing
Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
- foundation-models
- gpt
- single-cell
Cell and line magic for PGF/TikZ-to-SVG rendering in Jupyter notebooks
Jupyterlab extension to show notebook cell completion notifications
- jupyter
- jupyterlab
- browser-notifications
- jupyterlab-extension
High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
Methods for Image-Based Cell Profiling
Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
- single-cell
- scrna-seq
- scatac-seq
- deep-neural-networks
MCP server for spatial transcriptomics analysis through natural language interfaces.
- bioinformatics
- cell-communication
- deconvolution
- machine-learning
Predicting Cell Health with Morphological Profiles
- carpenter-lab
- morphological-profiling
- crispr
- cell-painting
A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources
- bioimage-analysis
- cell-classification
- computer-vision
- digital-pathology