Automated 3D cell detection in very large images
- microscopy
- cell-detection
- deep-learning
- image-analysis
Repository Index
47,133 repositories indexed
121–144 of 203 · Most stars
Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome
- cancer-genomics
- cnv-detection
- single-cell
- phylogeny
Wide-Integer implements a generic C++ template for uint128_t, uint256_t, uint512_t, uint1024_t, etc.
- high-performance
- embedded-systems
- multiprecision
- numerical
Multiresolution Adaptive Numerical Environment for Scientific Simulation
talk with NCBI entrez using R
PyTorch Connectomics: segmentation toolbox for EM connectomics
- computer-vision
- neuroscience
- connectomics
- pytorch
A high-performance, high precision, zero allocation fixed-point decimal library for financial applications
- golang
- high-performance
- zero-allocation
- money
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
- cancer-imaging-research
- radiomics
- radiomics-features
- machine-learning
Practical volume computation and sampling in high dimensions
- geometry
- statistics
- polyhedral-computations
- random-walk
Associated Repository for "Translation between Molecules and Natural Language"
scPerturb: A resource and a python/R tool for single-cell perturbation data
- cite-seq
- database
- perturbation
- scatac-seq
A Python interface to access neuroanatomical atlases
- neuroscience
- python
- microscopy
- registration
The official NFFT library repository
- nfft
- fftw
- fourier-transform
- c
ChemML is a machine learning and informatics program suite for the chemical and materials sciences.
- quantum-mechanics
- materials-informatics
- data-science
- machine-learning
Simple Features is a pure Go Implementation of the OpenGIS Simple Feature Access Specification
Sparse matrix formats for linear algebra supporting scientific and machine learning applications
- go
- golang
- matrix
- scientific-computing
A library of abstract interfaces for mathematical structures in Coq [maintainer=@spitters,@Lysxia]
- coq-library
- typeclasses
- mathematics
- coq
Scientific computing in pure Crystal
- crystal
- linear-algebra
- machine-learning
- autograd
Automated 3D brain registration with support for multiple species and atlases.
- registration
- atlases
- brain
- neuroscience
Data visualisation web components for the life sciences.
- biohackeu21
- bioinformatics
- visualization
- webcomponents
Date and time manipulation for modern Fortran
- fortran
- datetime
- timedelta
- strftime
Accurate and efficient spot detection for microscopy data
A library of mechanised undecidability proofs in the Coq proof assistant.
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
- neuroimaging
- reproducibility
- pipeline
- meta-analysis