Repository Index

A simple script for fracturing polygons. Also adds nice helper functions for polygons like calculateArea, triangulate, getRandomPointsInPolygon, getBoundingRect)

• gdscript
• polygon2d-fracture
• godot-engine
• godot

Universal cheminformatics toolkit, utilities and database search tools

• indigo
• bingo
• cheminformatics
• chemistry

V library to develop Artificial Intelligence and High-Performance Scientific Computations

• v
• hacktoberfest
• linear-algebra
• optimization

Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star

• dna
• language-model
• variant-effect-prediction
• genomics

A library designed to ease geographic coordinate format conversions, and determine sun/moon information in C#

• moon
• coordinates
• longitude
• latitude

Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI (Nature Medicine). PLIP is a large-scale pre-trained model that can be used to extract visual and language features from pathology images and text description. The model is a fine-tuned version of the original CLIP model.

• artificial-intelligence
• clip
• pathology
• vision-and-language

An extension for Inkscape that makes it easier to draw optical diagrams.

• inkscape-extension
• optics-simulation
• python
• optics

Neural networks toolbox focused on medical image analysis

• python
• keras
• convolutional-neural-networks
• brain

Deep Reinforcement Learning for de-novo Drug Design

• deeplearning
• reinforcement-learning
• cheminformatics
• molecular-modeling

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

• hubmap
• imaging
• openmicroscopy
• ome-tiff

A C/C++ header file for fast 32-bit division remainders (and divisibility tests) on 64-bit hardware.

• performance

The official implementation of 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction (ICLR 2023)

• ai-for-science
• diffusion-models
• drug-design
• equivariant-networks

Produce a sharp image of a planetary system object (moon, sun, planets) from many seeing-affected frames according to the "lucky imaging" technique.

Supernodal sparse direct solver. https://portal.nersc.gov/project/sparse/superlu/

Genetic Algorithm for solving optimization of trading strategies using Gekko

Source code for "DeepDTA: deep drug-target binding affinity prediction"

• protein-ligand-interactions
• convolutional-neural-networks

GraphDTA: Predicting drug-target binding affinity with graph neural networks

Ark -- Archetype-based Entity Component System (ECS) for Go.

• ecs
• entity-component-system
• go
• golang

Native R and Python sample-deletion robustness for omics: candidate certificates, minimum deletion bounds, Bioconductor model refits and donor-level pseudobulk

• bioinformatics
• exact-optimization
• metabolomics
• paired-data

City Energy Analyst (CEA) is an open-source urban building energy modeling (UBEM) platform and computation tool for the design of low-carbon and highly efficient cities.

• python
• urban-design
• urban-analytics
• ubem

Solve automatic numerical differentiation problems in one or more variables.

Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging. The name Kaapana comes from the Hawaiian word kaʻāpana, meaning "distributor" or "part".

• imaging
• ai
• cloud-computing
• medical-imaging

CEED Library: Code for Efficient Extensible Discretizations

• ceed
• high-order
• exascale-computing
• api

RNA-seq prediction with deep convolutional neural networks.