Open-source foundation of the user-sponsored PyMOL molecular visualization system.
Repository Index
89,073 visible repositories in the index
121–144 of 448 · Most stars
Flexible Collision Library
- collision
- collision-detection
Official git repository of Elmer FEM software
- finite-element-methods
- finite-elements
- fem
- multiphysics
Open source tools for computational pathology - Nature BME
- histopathology
- pathology
- weakly-supervised-learning
- whole-slide-imaging
GPGPU-Sim provides a detailed simulation model of contemporary NVIDIA GPUs running CUDA and/or OpenCL workloads. It includes support for features such as TensorCores and CUDA Dynamic Parallelism as well as a performance visualization tool, AerialVisoin, and an integrated energy model, GPUWattch.
Python package for compiling and analyzing quantum algorithms to simulate electronic structures.
- quantum-computing
- quantum-chemistry
- quantum-algorithms
- quantum-programming-language
Shadow is a discrete-event network simulator that directly executes real application code, enabling you to simulate distributed systems with thousands of network-connected processes in realistic and scalable private network experiments using your laptop, desktop, or server running Linux.
- emulation
- simulation
- networking
- experimentation
Fast and flexible physics-based battery models in Python
- pybamm
- battery-models
- solvers
- python
The Control Toolbox - An Open-Source C++ Library for Robotics, Optimal and Model Predictive Control
- optimal-control
- model-predictive-control
- ilqr
- ilqg
A .NET GIS solution that is fast and reliable for the .NET platform.
- topology
- nts
- sfs
- c-sharp
Deep probabilistic analysis of single-cell and spatial omics data
- scrna-seq
- variational-bayes
- variational-autoencoder
- cite-seq
A set of documented functions for simulating the performance of photovoltaic energy systems.
- solar-energy
- python
- renewable-energy
- renewables
A collection of GICP-based fast point cloud registration algorithms
- point-cloud
- pcl
- gicp
- icp
Implementation of Alphafold 3 from Google Deepmind in Pytorch
- artificial-intelligence
- deep-learning
- attention-mechanisms
- denoising-diffusion
An acausal modeling framework for automatically parallelized scientific machine learning (SciML) in Julia. A computer algebra system for integrated symbolics for physics-informed machine learning and automated transformations of differential equations
- differential-equations
- ode
- dae
- ordinary-differential-equations
MDAnalysis is a Python library to analyze molecular dynamics simulations.
- molecular-dynamics
- python
- science
- trajectory-analysis
Python-based research interface for blackbox and hyperparameter optimization, based on the internal Google Vizier Service.
- vizier
- hyperparameter-optimization
- tuning
- tuning-parameters
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
- itk
- insight-toolkit
- image-analysis
- medical-imaging
A lightweight, easy-to-use, and efficient library for processing and rendering 3D data (C++ & Python)
Fast symbolic computation, code generation, and nonlinear optimization for robotics
- robotics
- python
- cpp
- code-generation
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
- artificial-intelligence
- deep-learning
- protein-folding
- attention-mechanism
EnergyPlus™ is a whole building energy simulation program that engineers, architects, and researchers use to model both energy consumption and water use in buildings.
A library for differentiable robotics on manifolds.
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
- bioinformatics
- cross-platform
- fasta
- golang