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Tags: Science and math
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Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging. The name Kaapana comes from the Hawaiian word kaʻāpana, meaning "distributor" or "part".

CEED Library: Code for Efficient Extensible Discretizations

  • ceed
  • high-order
  • exascale-computing
  • api

Open source math and physics engine that executes MATLAB-syntax code. Features a modern compiler, automatic GPU acceleration for large calculations, and support for math on geometry / FEA calculations.

Schema and generated objects for biolink data model and upper ontology

  • biolink
  • monarchinitiative
  • gene-ontology
  • datamodel

Open Parser for Systematic IUPAC Nomenclature. Chemical name to structure conversion

Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome

  • cancer-genomics
  • cnv-detection
  • single-cell
  • phylogeny

High performance computational platform in Python for the spectral Galerkin method

  • spectral-methods
  • galerkin
  • fenics
  • turbulence

A high-performance, high precision, zero allocation fixed-point decimal library for financial applications

  • golang
  • high-performance
  • zero-allocation
  • money

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk