Repository Index

An ActionScript 3 clientside API for interacting with a CouchDB instance.

Draw a polygon on the map or paste a geoJSON and explore how the s2.RegionCoverer covers it with S2 cells depending on the min and max levels

• s2
• geojson
• go

Multigrate: multiomic data integration for single-cell genomics

CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer

• cancer
• foundation-model
• single-cell

Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network

Django style fixtures for Golang's excellent built-in database/sql library.

• go
• golang
• fixtures

3D shape analysis using deep learning

• cancer-biology
• cell-biology
• deep-learning
• geometric-deep-learning

A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders

An interactive tool for segmenting yeast cells using deep learning.

Single-cell fluorescence microscopy data analysis

• microscopy
• fluorescence-microscopy-imaging

Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics

• bioinformatics
• cell-type-deconvolution
• computational-biology
• deconvolution

A simple helper library with 2 NBConvert exporters for PDF/HTML export with no code cells

• jupyterlab
• jupyter
• python
• nbconvert

A small async DNS client for MicroPython

• esp32
• micropython
• rpi-pico-w
• asyncio

Z-stack Depth Colorcode ImageJ FIJI plugin

• imagej-plugin
• colorcode
• fiji
• imagej

A UITableViewCell with an editable text field

• swift
• cocoapods
• uitableviewcell
• ui

Supporting data files, documentation, and updated tips for the Cell Painting protocol

Excel Parser written in Elixir (currently only Excel 2000)

Documentation about cells

Light Weight Cells

Progressive Web App of Open Hackathon Platform based on Next.js

• pwa
• hackathon
• platform
• web-cell

Neovim plugin that launches a Jupyter/IPython console in a split to run files, lines, and Spyder‑IDE‑style runcells, with a ZMQ‑powered variable explorer and data viewer.

• ipython
• jupyter
• spyder-ide
• variable-explorer

Human Protein Atlas image classification competition

A flexible Julia toolkit for high-dimensional cellular profiles

• julia
• morphological-analysis
• high-content-screening

scPair: Boosting single cell multimodal analysis by leveraging single cell atlases and implicit feature selection