Repository Index

Inner ear models for Python

• python
• cochlea
• inner-ear
• model

Coq Repository at Nijmegen [maintainers=@spitters,@VincentSe,@Lysxia]

• coq-library
• real-number
• coq
• coq-ci

CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework

• ai4science
• llm
• multiagent-systems
• prompt-engineering

Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.

Structural variant detection and association testing

means completeness and balancing, from the Arabic word الجبر

• algebra
• vector
• matrix
• scalar

Syre workspace.

• science

Cumo (pronounced like "koomo") is CUDA aware numerical library whose interface is highly compatible with Ruby Numo

• ruby
• cuda
• numo
• scicentific-computing

Data Access Client for Global Surface Summary of the Day (GSOD) Weather Written in R

• r
• weather-data
• gsod
• ncdc

Scientific library for the D programming language

🔟 Implementation of rational number arithmetic for .NET with arbitrary precision.

• arbitrary-precision
• biginteger
• bigrational
• c-sharp

The Mines Java Toolkit

• geophysics
• scientific-computing
• visualization
• mines-java-toolkit

The Massively Parallel Quantum Chemistry program, MPQC, computes properties of atoms and molecules from first principles using the time independent Schrödinger equation.

Variations on Kirby & Paris' hydra battles and other entertaining math in Coq (collaborative, documented, includes exercises) [maintainer=@Casteran]

• coq
• hydra-battles
• ordinal-notations
• formal-proofs

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

• r
• neuroanatomy-toolbox
• cran
• neuron

A library for placing labels in areas.

MAT is library for working with multi-dimensional arrays which supports efficient interfacing to foreign and CUDA code. BLAS and CUBLAS bindings are available.

Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.

A command line weather app built using elixir

The framework for quantification of neuronal anatomy

• neuroscience
• neuroanatomy-toolbox
• imagej
• imagej2

An Erlang implementation of the R*-tree spacial data structure

Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

• minerva
• microscopy
• ome
• immunofluorescence

SIMD powered simple-math numerical operations on arrays for Common Lisp through CFFI [still experimental]

• lisp
• common-lisp
• scientific-computing
• simd

Tool for precise, interactive, fast and scalable FISH spot detection