Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
- diffusion-models
- docking
- binding
- computational-biology
Repository Index
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Biological foundation modeling from molecular to genome scale
A PyTorch library entirely dedicated to neural differential equations, implicit models and related numerical methods
- deep-learning
- neural-network
- neural-differential-equations
- pytorch
The official SuiteSparse library: a suite of sparse matrix algorithms authored or co-authored by Tim Davis, Texas A&M University.
- sparse-matrix
- mathematics
- c
- cpp
Toolkit for processing sequences in FASTA/Q formats
- bioinformatics
- sequence-analysis
JavaScript Topology Suite
A fast algorithm for finding the pole of inaccessibility of a polygon (in JavaScript and C++)
Symbolic programming for the next generation of numerical software
- symbolic-computing
- high-performance
- parallel-computing
- computer-algebra-system
Optimal Control for Switched Systems
- optimal-control
- mpc
- robotics
- control
Fast and embedded solvers for nonlinear optimal control and nonlinear model predictive control
- embedded
- optimization
- nonlinear
- optimal
This repo is created to serve simulaion and analysis on the data collected in Jiuyang Bai's dissertation research.
The Polygon Mesh Processing Library
- mesh-processing
- geometry-processing
- polygon-mesh
- triangle-mesh
Aggregate results from bioinformatics analyses across many samples into a single report.
- bioinformatics
- analysis
- pypi
- bioconda
Claude Code skills for academic papers: deep analysis, comics, summaries | 论文工艺：深度解读、漫画生成、速览总结
- academic
- ai-tools
- arxiv
- claude-code
Computational Geometry Unity library with implementations of intersection algorithms, triangulations like delaunay, voronoi diagrams, polygon clipping, bezier curves, ear clipping, convex hulls, mesh simplification, etc
- unity3d
- computational-geometry
- voronoi
- intersections
Differentiable, Hardware Accelerated, Molecular Dynamics
tl/dw (Too Long, Didn't Watch): Your Personal Research Multi-Tool - a naive attempt at 'A Young Lady's Illustrated Primer' (Open Source NotebookLM)
- ai-assistant
- ai-ml
- llm
- multi-tool
Knowledge is a tool for saving, searching, accessing, exploring and chatting with all of your favorite websites, documents and files.
Volt (VPhysics Jolt) is a replacement physics module for the Source Engine.
An AI co-scientist running on your desktop. Claude Science but better.
SymEngine is a fast symbolic manipulation library, written in C++
- math
- computer-algebra
- c-plus-plus
Penumbra Color Theme
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
- blender
- biochemistry
- protein
- protein-structure
Unix, R and python tools for genomics and data science
- cancer-genomics
- bioinformatics
- data-science