MCP server for spatial transcriptomics analysis through natural language interfaces.
- bioinformatics
- cell-communication
- deconvolution
- machine-learning
Repository Index
47,133 repositories indexed
145–168 of 174 · Most stars
A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources
- bioimage-analysis
- cell-classification
- computer-vision
- digital-pathology
2D triangulation library. Allows translating lines and polygons (both based on points) to the language of GPUs.
- triangulation
- computational-geometry
- golang
Multi-stage Riemannian flow matching for physically valid molecular docking, with GNINA scoring, PoseBusters filtering, CLI inference, and benchmarks.
- alphafold3
- docking
- drug-design
- drug-discovery
The formal proof of the Odd Order Theorem
- coq
- ssreflect
- mathcomp
- feit-thompson-theorem
A common lisp library that provides a numeric type with optional unit and/or uncertainty for computations with automatic error propagation.
NASA/JPL SPICE Toolkit for C – patched for cross-platform compatibility
- astronomy
- astronomical-algorithms
- celestial-mechanics
- nasa
Multi-platform quantum programming library, written in TypeScript, good for JS/NodeJS
- quantum-computing
- quantum-programming-language
- quantum
Arbitrary Precision Library for Delphi with Support for Integer and Floating Point Computations.
Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics
- bioinformatics
- cell-type-deconvolution
- computational-biology
- deconvolution
Java Scientific Computing Library - Signal Processing, FFT, Filters, PSD, DCT, SciPy-like APIs for JVM & Android used in Machine Learning and Data Science.
- android
- java
- python
- scipy
Computer Algebra for microcontrollers using https://github.com/micropython/micropython
Workbench for practical machine learning in Ruby.
- machine-learning
- machine-learning-algorithms
- neural-network
- neural-networks
An effort to consolidate the needs and plans of individuals and organizations using Common Lisp to meet their numerical and scientific computing needs.
Coq formalization of algorithms due to Tarjan and Kosaraju for finding strongly connected graph components using Mathematical Components and SSReflect [maintainers=@CohenCyril,@palmskog]
- coq
- mathcomp
- ssreflect
- tarjan-algorithm
Coqtail is a library of mathematical theorems and tools proved inside the Coq proof assistant. Results range mostly from arithmetic to real and complex analysis. [maintainer=@jmadiot]
- coq
- complex-analysis
- real-analysis
mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance
- qa
- mri
- neuroimaging
- niqc
UV-first benchmark for protein-ligand docking with reproducible annotation, pocket similarity, and HPC workflows.
- benchmark
- bioinformatics
- cheminformatics
- computational-chemistry
Node-RED nodes for The Weather Company and Weather Underground Personal Weather Station APIs
vala and scientific numerical computation
C++ modules for scalar, vector and complex math. And maths.
- cpp20
- math
- mathematics
- vectors
DetecDiv provides a comprehensive set of tools to analyze time microscopy images using deep learning methods. The software structure is such that data can be processed either at the command line or using a graphical user-interface. Detecdiv classification models include : image classification and regression, semantic segmentation, LSTM networks to analyze data and image timeseries.
A tiny easy math include addition multiplication subtraction division.
- math
- math-library
- mathematics
- true-math
Simple webapp for generating small ligand conformers
- computational-biology
- computational-chemistry
- conformer-generation
- rdkit