An interactive image processing program for biologists written in Python.
- biologists
- python
- imagej
- calcium
Repository Index
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Z-stack Depth Colorcode ImageJ FIJI plugin
- imagej-plugin
- colorcode
- fiji
- imagej
A Python library which extracts strokes (outlines) from an SVG file as a series of line segments appropriate for driving pen plotters
MicroPython FrameBuffer extension: larger and rotated font, triangles and circles
- font
- framebuffer
- large-font
- micropython
Beautiful Micropython Graphics
Imagej macro to calculate the MTF based on a knife edge measurement
- imagej-macro
- electron-microscopy
- image-analysis
- x-ray-imaging
Pythonic dynamic sprite generator
A small Python module for BMP image processing.
A Python package to analyze matrix fiber orientation and intensity around cells as a proxy for cellular forces. Also measures alignment relative to X/Y axes, points and lines, with optional masks, a Python API and browser tools for analysis and group comparisons.
- contractility
- orientation
- fibrosis
- mechanobiology
a design tool for determining if a given design is a valid stencil
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
- segmentation
- image-processing
- zebrafish
- vasculature
A very fast micropython jpeg encoder and decoder for the esp32, with precompiled firmware.
DetecDiv provides a comprehensive set of tools to analyze time microscopy images using deep learning methods. The software structure is such that data can be processed either at the command line or using a graphical user-interface. Detecdiv classification models include : image classification and regression, semantic segmentation, LSTM networks to analyze data and image timeseries.
Grid-like images/gifs for Pinned Gists
- crop-image
- github-readme
- profile
- pinned-gist
Single Image Random Dot Stereogram for Tensorflow
- tensorflow
- jupyter-notebook
- 3d-reconstruction
- stereogram-creator
🔬Python package for high-throughput single-cell imaging analysis.
- microscopy-image-analysis
- single-cell-analysis
tablib renderer (xlsx, xls, csv) for pyramid
Simple utility to print vpype SVG files to the Panasonic Penwriter line of plotters
Python library for statistical analysis of mRNA and protein distributions in fluorescent microscopy images
Using a U-Net for image segmentation, blending predicted patches smoothly is a must to please the human eye.