C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
- variant-calling
- genomics
- vcf-manipulation
- genotyping
Repository Index
47,133 repositories indexed
169–192 of 525 · Most stars
Firedrake is an automated system for the portable solution of partial differential equations using the finite element method (FEM)
Modern C++ quantum computing library
- quantum-computing
- c-plus-plus
- cpp
- cpp11
Fast, sensitive and accurate integration of single-cell data with Harmony
Algebraic Multigrid Solvers in Python
- amg
- solver
- python
- multigrid
A Free and Open Source Python Library for Multiobjective Optimization
- optimization
- multiobjective
- evolutionary
- algorithm
Nonconvex embedded optimization: code generation for fast real-time optimization + ROS support
- embedded-optimization
- nonconvex
- model-predictive-control
- rust-library
FiPy is a Finite Volume PDE solver written in Python
- scientific-computing
- scientific-computing-with-python
- phase-field
- materials-science
The Point Processing Toolkit (pptk) is a Python package for visualizing and processing 2-d/3-d point clouds.
- pointclouds
- 3-d
- visualization
- lidar
Numerical linear algebra software package
- linear-algebra
- hpc
- gpu-computing
- cuda
DiffSharp: Differentiable Functional Programming
- machine-learning
- tensor
- dotnet
- autodiff
A Swift micro library for generating Sunrise and Sunset times on device, requiring no network access.
- swift
- sunrise
- sunset
- ios
Module for statistical learning, with a particular emphasis on time-dependent modelling
- machine-learning
- python
- point-process
- optimization
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
- sequence-alignment
- edit-distance
- levehnstein-distance
- library
A pure Go 3D math library.
Simulate Functional Mock-up Units (FMUs) in Python
- fmi
- python
- fmi-standard
ACADO Toolkit is a software environment and algorithm collection for automatic control and dynamic optimization. It provides a general framework for using a great variety of algorithms for direct optimal control, including model predictive control, state and parameter estimation and robust optimization.
🎯 A comprehensive gradient-free optimization framework written in Python
- metaheuristics
- optimization
- optimization-algorithms
- python
A pure JavaScript medical research image viewer.
Junction Tree Variational Autoencoder for Molecular Graph Generation (ICML 2018)
Main yt repository
- data
- visualization
- analysis
- python
Molecular Processing Made Easy.
- python
- molecule
- rdkit
- drug-discovery
A unit handling library for ruby
- ruby
- unit-math
- conversions
- temperature-units
A Python platform to perform parallel computations of optimisation tasks (global and local) via the asynchronous generalized island model.
- optimization
- optimization-algorithms
- optimization-methods
- optimization-problem