Repository Index

BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.

• chatgpt
• jupyter

A tool for cell instance aware segmentation in densely packed 3D volumetric images

• segmentation
• deep-learning
• bioinformatics
• neural-network

Resident Evil Outbreak native PC port: static recompilation of the PS2 game with online co-op (openSNAP), randomizer, cheats, controller support and 4K video settings.

• capcom
• cheats
• co-op
• decompilation

Create your Link in Bio for Bluesky

• atproto
• bluesky

OCaml Bioinformatics Library

A tiny polar charts library made with D3.js

Very simple swift wrapper for Biometric Authentication Services (Touch ID) on iOS.

CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework

• ai4science
• llm
• multiagent-systems
• prompt-engineering

We would like to maintain a list of resources which aim to solve molecular docking and other closely related tasks.

• ai-aided-drug-discovery
• awesome
• drug-discovery
• molecular-docking

tutorials made for biologists to learn deep learning

• biologists
• keras
• deeplearning
• deep-learning

TranslatedAntifouling coating evidence panel: formulation sandbox, route biofouling stress, literature bounds. Simulation ≠ measurement. Live: https://simulator.jassyhong.top

• biofouling
• formulation
• antifouling
• evidence-panel

Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

• biology
• fluorescence
• image-analysis
• image-processing

Unified parsing and printing for routes in PureScript

Error/Warning reporting frontend for the PureScript compiler

TypeDB Bio: Biomedical Knowledge Graph

• bioinformatics
• knowledge-graph
• knowledge-base
• drug-discovery

Secure biometric authentication for Capacitor with Face ID, Touch ID, and Android biometrics.

• capacitor
• capacitor-plugin
• ionic

RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation

• biological-images
• root
• painter
• segmentation

🧙 meiga is a Python µframework that provides a simple, fully typed, monad-based result type ➡️ Result[Value, Error].

• monads
• result-type
• typing
• python

A list of awesome selected resources towards the application of machine learning in Biomedical/Healthcare Imaging, inspired by

Autonomous multi-agent framework to optimize scientific software

• acceleration
• agentic-ai
• ai-agents
• bioinformatics

NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions

• computational-biology
• bioinformatics
• graph-convolution
• deep-learning

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

• r
• neuroanatomy-toolbox
• cran
• neuron

:art: Image processing toolbox for R

• r
• bioinformatics
• image-processing
• image-analysis

PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).

• deep-generative-model
• deep-learning
• single-cell-data-integration
• single-cell-multiomics