Repository Index

Research experiments exploring uncommon quant techniques.

• analysis
• jupyter-notebook
• python
• quant

A command line weather app built using elixir

Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications

• cell-annotation
• multiplexed-imaging
• mpif

C# math expression library with symbolic computation support

• csharp
• dotnet
• expression-parser
• math

Elixir library implementing a parallel matrix multiplication algorithm and other utilities for working with matrices. Used for benchmarking computationally intensive concurrent code.

common lisp library providing common math functions used in games

Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

• minerva
• microscopy
• ome
• immunofluorescence

SIMD powered simple-math numerical operations on arrays for Common Lisp through CFFI [still experimental]

• lisp
• common-lisp
• scientific-computing
• simd

Tool for precise, interactive, fast and scalable FISH spot detection

An extensible .NET genetic algorithm library for optimization and artificial intelligence - Evolutionary computation and complex problem solving made simple

• artificial-intelligence
• csharp
• dotnet
• evolutionary-algorithm

Efficient and expressive arrayed vector math library with multi-threading and CUDA support in Common Lisp.

A powerful library extending VBA with over 100 functions for math, stats, finance, and data manipulation. It supports matrix operations, and user-defined functions, enhancing automation and analysis within Microsoft Office and LibreOffice environments for data management, financial calculations, an more.

• equation-systems
• mathematical-expression-parser
• mathematical-expressions-evaluator
• determinant-calculation

Common Lisp package for simple two dimensional computational geometry.

Native Haxe functions for graphical linear algebra (à la GLM: https://github.com/g-truc/glm/tree/master/glm)

80% xectors

Graph Theory [maintainers=@chdoc,@damien-pous]

• coq
• graph-theory
• mathcomp
• docker-coq-action

MCP server for spatial transcriptomics analysis through natural language interfaces.

• bioinformatics
• cell-communication
• deconvolution
• machine-learning

Updated infix.cl of the CMU AI repository, originally written by Mark Kantrowitz

• infix-notation
• common-lisp
• mathematics

A matrix library for common lisp

A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources

• bioimage-analysis
• cell-classification
• computer-vision
• digital-pathology

2D triangulation library. Allows translating lines and polygons (both based on points) to the language of GPUs.

• triangulation
• computational-geometry
• golang

Multi-stage Riemannian flow matching for physically valid molecular docking, with GNINA scoring, PoseBusters filtering, CLI inference, and benchmarks.

• alphafold3
• docking
• drug-design
• drug-discovery

The formal proof of the Odd Order Theorem

• coq
• ssreflect
• mathcomp
• feit-thompson-theorem

A common lisp library that provides a numeric type with optional unit and/or uncertainty for computations with automatic error propagation.