Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Repository Index
73,862 visible repositories in the index
169–192 of 466 · Most stars
WebGL accelerated JavaScript molecular graphics library
- molecular-graphics
- molecular-modeling
- computational-biology
- computational-chemistry
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models
- machine-learning
- generative-models
- drug-discovery
- benchmark
A coupling library and ecosystem for partitioned multi-physics and multi-scale simulations, including surface and volume coupling.
- multi-physics
- fluid-structure-interaction
- high-performance-computing
- conjugate-heat-transfer
flybrainlabs authority nodes, complete simulation replay, archives, and service APIs.
:spider_web: Gmsh for Python
- python
- pypi
- mesh-generation
- engineering
Public/backup repository of the GROMACS molecular simulation toolkit. Please do not mine the metadata blindly; we use https://gitlab.com/gromacs/gromacs for code review and issue tracking.
linalg.h is a single header, public domain, short vector math library for C++
Foundation Models for Genomics & Transcriptomics
Wallet UI simulation tool for BTC, ETH, SOL, XRP, and 200+ assets. Customize displayed balances in a controlled demo environment with persistent visual settings and screenshot-ready previews. Designed for testing, demonstrations, and UI prototyping without altering actual blockchain balances or transactions.
- bitcoin-transaction-tool
- browser-crypto-wallet
- crypto-broadcast-api
- electrum-payment
Unknown Horizons Godot Engine Port
- simulation
- strategy
- game-development
- godot
Digital Signal Processing for Go
Scientific-grade astronomy routines for Python
C++ library for solving large sparse linear systems with algebraic multigrid method
- amg
- c-plus-plus
- sparse-linear-systems
- opencl
A header-only C++ library for large scale eigenvalue problems
- eigenvalues
- arpack
- linear-algebra
- spectra
A lightweight high performance tensor algebra framework for modern C++
- tensors
- tensor-contraction
- multidimensional-arrays
- simd
Polygonal Surface Reconstruction from Point Clouds (C++ & Python)
- surface-reconstruction
- urban-modeling
- urban-reconstruction
- primitive-extraction
Qhull development for www.qhull.org -- Qhull 2020.2 (8.1-alpha1) at https://github.com/qhull/qhull/wiki
- qhull
- computational-geometry
- convex-hull
- delaunay-triangulation
Python package for graph neural networks in chemistry and biology
- deep-learning
- graph-neural-networks
- dgl
- cheminformatics
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
- foundation-models
- genomics
- language-models
Pathology Foundation Model - Nature Medicine
- foundation
- foundation-model
- histopathology
- mahmoodlab
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
- dna
- k-mer
- python
- bloom-filter
A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)
- deep-learning
- pytorch
- deep-chemistry
- graph-neural-network