Repository Index

Native R and Python sample-deletion robustness for omics: candidate certificates, minimum deletion bounds, Bioconductor model refits and donor-level pseudobulk

• bioinformatics
• exact-optimization
• metabolomics
• paired-data

City Energy Analyst (CEA) is an open-source urban building energy modeling (UBEM) platform and computation tool for the design of low-carbon and highly efficient cities.

• python
• urban-design
• urban-analytics
• ubem

Descriptor computation(chemistry) and (optional) storage for machine learning

Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging. The name Kaapana comes from the Hawaiian word kaʻāpana, meaning "distributor" or "part".

• imaging
• ai
• cloud-computing
• medical-imaging

CEED Library: Code for Efficient Extensible Discretizations

• ceed
• high-order
• exascale-computing
• api

formally verified category theory library

• category-theory
• formal-verification
• formal-proofs

Open source math and physics engine that executes MATLAB-syntax code. Features a modern compiler, automatic GPU acceleration for large calculations, and support for math on geometry / FEA calculations.

• matlab
• rust
• jit-compiler
• linear-algebra

Boost.Multiprecision

Matrix Algebra proGrams In Common Lisp.

• common-lisp
• matrix-algebra
• linear-algebra

The RAW Complex.js is a complex numbers library written in JavaScript

• complex-numbers
• vector
• trigonometric-functions
• javascript

Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

• histology
• wsi-images
• pan-cancer-analysis
• genomics

Simple and lightweight computational geometry library for .Net

Mathematical Components compliant Analysis Library

• rocq
• analysis
• coq
• mathcomp

OPEM (Open Source PEM Fuel Cell Simulation Tool)

• chemistry
• pem
• fuel-cell
• opem

Automated 3D cell detection in very large images

• microscopy
• cell-detection
• deep-learning
• image-analysis

Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome

• cancer-genomics
• cnv-detection
• single-cell
• phylogeny

Allocators, I/O streams, math, geometry, image and audio processing for D

• utility-library
• dlang
• linear-algebra
• computational-geometry

Graph-based molecule modeling toolkit for cheminformatics

• cheminformatics
• molecular-modeling
• chemistry
• toolkit

Wide-Integer implements a generic C++ template for uint128_t, uint256_t, uint512_t, uint1024_t, etc.

• high-performance
• embedded-systems
• multiprecision
• numerical

:spider_web: Simple mesh generator inspired by distmesh.

• mesh
• finite-elements
• mathematics
• mesh-generation

Umbrella package of the 'spatstat' family................

• r
• spatial-analysis
• spatial-data
• spatstat

A gallery of animations in statistics and utilities to create animations

• r
• r-package
• animation
• statistics

Converts medical images to more displayable formats, e.g. NIfTI to jpg.

A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.