OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.
Repository Index
47,133 repositories indexed
169–192 of 268 · Most stars
🏃 The go-to single-cell Foundation Model
- batch-correction
- cell-biology
- celltype-annotation
- denoising
LLM for Drug Editing, ICLR 2024
- chatgpt
- conversation
- drug
- drug-discovery
Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
- disentanglement
- drug-discovery
- genomics
- perturbation
A framework for high-performance domain decomposition methods.
- c-plus-plus
- linear-algebra
- python
- fortran
TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524
- self-attention
- compound-protein-interaction
- transformercpi
- structure-free-virtual-sreening
Optimising chemical reactions using machine learning
- chemistry
- machine-learning
- optimization
- bayesian-optimization
Safe Bayesian Optimization
- gaussian-processes
- optimization
- robotics
- reinforcement-learning
Interpretable bilinear attention network with domain adaptation improves drug-target prediction.
Numpy-like library in swift. (Multi-dimensional Array, ndarray, matrix and vector library)
- swift
- math
- ndimensional-arrays
- ndarray
Python package for image-based profiling
- cytominer
- microscopy
- morphological-profiling
- python
A library of mechanised undecidability proofs in the Coq proof assistant.
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
- protein
- protein-sequences
- protein-design
- representation-learning
Easy link prediction tool
- python
- network-analysis
- link-prediction
- research
SIMD enhanced Array operations
Astrophotography capture and processing
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
- neuroimaging
- reproducibility
- pipeline
- meta-analysis
Clipping and geometric operations for spherical polygons.
- d3
- map
- polygon-clipping
- projection
A strongly-typed genetic programming framework for Python
- python
- ipynb
- genetic-programming
- framework
code to run sei and obtain sei and sequence class predictions
Coq Repository at Nijmegen [maintainers=@spitters,@VincentSe,@Lysxia]
- coq-library
- real-number
- coq
- coq-ci
Extensive math expression evaluator library for JavaScript and Node.js
- typescript
- interpreter
- javascript
- calculator
:spider_web: Compute interesting points, areas, and volumes in simplex meshes of any dimension.
- mathematics
- python
- pypi
- voronoi-diagram
CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework
- ai4science
- llm
- multiagent-systems
- prompt-engineering