Repository Index

Virtual-Dom in ClojureScript

Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications

• cell-annotation
• multiplexed-imaging
• mpif

An asynchronous coroutine-based Kotllin client for the Chrome DevTools Protocol

• chrome-devtools-protocol
• chrome
• async
• coroutines

The repository host gives no description.

An open source glucometer

A library to build and execute typed scientific workflows

• ocaml
• bioinformatics
• computational-biology
• workflow

MCP server for spatial transcriptomics analysis through natural language interfaces.

• bioinformatics
• cell-communication
• deconvolution
• machine-learning

ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.

• stitching
• microscopy
• microscopy-images
• fluorescence-microscopy-imaging

A framework for keeping biomedical text mining result up-to-date

• bionlp
• text-mining
• infrastructure
• python

The repository host gives no description.

Tool for segmentation in bioimaging

• napari
• bioimage-analysis

A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources

• bioimage-analysis
• cell-classification
• computer-vision
• digital-pathology

A NodeJS module for reporting new version of Chrome extension being published on Chrome Web Store

Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network

3D shape analysis using deep learning

• cancer-biology
• cell-biology
• deep-learning
• geometric-deep-learning

A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders

Object Pascal WebSocket Client & Server Library

• delphi
• fpc
• lazarus
• linux

Plugins for bone image analysis

• fiji-plugin
• image-analysis
• image-processing
• imagej-plugins

Simple dashboard to visualize trends in bloodwork biomarkers

Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics

• bioinformatics
• cell-type-deconvolution
• computational-biology
• deconvolution

An interactive image processing program for biologists written in Python.

• biologists
• python
• imagej
• calcium

Z-stack Depth Colorcode ImageJ FIJI plugin

• imagej-plugin
• colorcode
• fiji
• imagej

Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.

• microscopy
• image-processing
• segmentation
• biology

Provides a template makefile for add quickly a build sytem for your project