Repository Index

A Lean formalization of the Classification of Finite Simple Groups

OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.

🏃 The go-to single-cell Foundation Model

• batch-correction
• cell-biology
• celltype-annotation
• denoising

A framework for high-performance domain decomposition methods.

• c-plus-plus
• linear-algebra
• python
• fortran

TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524

• self-attention
• compound-protein-interaction
• transformercpi
• structure-free-virtual-sreening

Optimising chemical reactions using machine learning

• chemistry
• machine-learning
• optimization
• bayesian-optimization

The repository host gives no description.

SolarEstimator: pvlib-based solar estimation platform with Tkinter GUI

• activator
• application
• gui
• pvlib

Chemical 2D structure editor application/applet based on the Chemistry Development Kit

• blueobelisk
• java
• chemistry

⚡ Open-source software for deep learning-based digital pathology

• deep-learning
• machine-learning
• digital-pathology
• computational-pathology

Python package for image-based profiling

• cytominer
• microscopy
• morphological-profiling
• python

RTree2D is a 2D immutable R-tree for ultra-fast nearest and intersection queries in plane and spherical coordinates

• scala
• rtree
• 2d
• str

:pushpin: State of the art point location and neighbour finding algorithms for region quadtrees, in Go

• quadtree
• go

Astrophotography capture and processing

Auto-QChem is an automated workflow for the generation and storage of DFT calculations for organic molecules.

• cheminformatics
• dft-calculations
• automation
• feature

Clipping and geometric operations for spherical polygons.

• d3
• map
• polygon-clipping
• projection

OCaml Bioinformatics Library

:new_moon: Lune.js — Calculate the phases of the moon

• moon
• lune
• javascript
• phase

Learning cell communication from spatial graphs of cells

• tensorflow
• gnn
• glm
• cvae

OCaml Math Library

Extensive math expression evaluator library for JavaScript and Node.js

• typescript
• interpreter
• javascript
• calculator

Delphi matrix library

CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework

• ai4science
• llm
• multiagent-systems
• prompt-engineering

A Swift port of the Cassowary linear constraint solver

• cassowary
• constraint-solver
• swift